Jatropha Genome Database

JcCB0733251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0733251.10 + phase: 0 /pseudo/partial
         (164 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028102001 assembled CDS                                       144   2e-35
GSVIVT01020232001 assembled CDS                                        50   4e-07
GSVIVT01038589001 assembled CDS                                        49   1e-06
GSVIVT01026529001 assembled CDS                                        46   8e-06

>GSVIVT01028102001 assembled CDS
          Length = 390

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/110 (60%), Positives = 80/110 (72%), Gaps = 4/110 (3%)

Query: 51  YNTHAWAEKSFENLLSRAEEIVEDF---TPPSDTCNSDDTACQACGSRDRGDVMLICGDE 107
           YNTHAWAEKSF NL++R+EEIVED    TPP D  + +D  C+ CGS +RG+VMLICG+E
Sbjct: 279 YNTHAWAEKSFANLINRSEEIVEDLANLTPP-DNQDINDLNCEVCGSHERGEVMLICGNE 337

Query: 108 SGSIGCGIGMHMDCFDPPLENIPEEDWFCPNCXXXXXXXXXAKRRRKGTS 157
           SGSIGCG+G H+DC DPPL  +PEEDWFCP C          KR +KG S
Sbjct: 338 SGSIGCGVGTHIDCCDPPLTEVPEEDWFCPKCRGSINRINPPKRTKKGNS 387


>GSVIVT01020232001 assembled CDS
          Length = 1789

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 25/124 (20%)

Query: 34  MACVLSFMENASPRLXLYNTHAWAEKSFENLLSRAEEIVEDFTPPSDTCNSDDTACQACG 93
           +  V  FM  A+        +A A+K  E+ ++ A+EI +           D+  C+ CG
Sbjct: 897 LTLVQKFMSYANVEF----LNAEAKKELEDTIACADEIPK--------APWDEGLCKVCG 944

Query: 94  SRDRGDVMLICGDESGSIGCGIGMHMDCFDPPLENIPEEDWFCPNCXXXXXXXXXAKRRR 153
                D +L+C        C    H  C +PPL  IPE +W+CP+C         A+R  
Sbjct: 945 VDKDDDNVLLCD------ACDSEYHTYCLNPPLARIPEGNWYCPSC-------VAAQRLS 991

Query: 154 KGTS 157
           +GTS
Sbjct: 992 QGTS 995


>GSVIVT01038589001 assembled CDS
          Length = 400

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)

Query: 86  DTACQACGSRDRGDVMLICGDESGSIGCGIGMHMDCFDPPLENIPEEDWFCPNC 139
           D  C+ CGS D  D +L+C        C  G H+ C  P + ++P+  WFCP+C
Sbjct: 85  DAVCEECGSGDAADELLLCDK------CDRGFHLFCLRPIIVSVPKGPWFCPSC 132


>GSVIVT01026529001 assembled CDS
          Length = 374

 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 55  AWAEKSFENLLSRAEEIVEDFTPPSDTCNSDDTACQACGSRDRGDVMLICGDESGSIGCG 114
           A   KS   +++ A+ +V       +  +  D  C  CGS D  D +L+C        C 
Sbjct: 34  ARKYKSMAEIMATAKYLV------IERADYSDVRCVQCGSGDHDDELLLCDK------CD 81

Query: 115 IGMHMDCFDPPLENIPEEDWFCPNC 139
            G HM C  P +  IP   W CP+C
Sbjct: 82  RGFHMSCLRPIVVRIPIGTWLCPSC 106