Jatropha Genome Database

JcCB0733091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0733091.10 - phase: 2 /partial
         (74 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037666001 assembled CDS                                       140   9e-35
GSVIVT01030430001 assembled CDS                                       137   9e-34
GSVIVT01012719001 assembled CDS                                       135   5e-33
GSVIVT01027638001 assembled CDS                                       129   3e-31
GSVIVT01001307001 assembled CDS                                       125   3e-30
GSVIVT01028202001 assembled CDS                                        91   8e-20

>GSVIVT01037666001 assembled CDS
          Length = 119

 Score =  140 bits (354), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 66/68 (97%), Positives = 68/68 (100%)

Query: 1   YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVRNVLPPTAAMMSAIYEENKDEDGFLYMT 60
           YLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV+NVLPPTAAMMSAIYEENKDEDGFLYMT
Sbjct: 50  YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVKNVLPPTAAMMSAIYEENKDEDGFLYMT 109

Query: 61  YSGENTFG 68
           YSGENTFG
Sbjct: 110 YSGENTFG 117


>GSVIVT01030430001 assembled CDS
          Length = 121

 Score =  137 bits (345), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 63/68 (92%), Positives = 67/68 (98%)

Query: 1   YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVRNVLPPTAAMMSAIYEENKDEDGFLYMT 60
           YLVPADLTVGQFVYVVRKRIKL+ EKAIFIF++N+LPPTAAMMSAIYEENKDEDGFLYMT
Sbjct: 50  YLVPADLTVGQFVYVVRKRIKLTPEKAIFIFIKNILPPTAAMMSAIYEENKDEDGFLYMT 109

Query: 61  YSGENTFG 68
           YSGENTFG
Sbjct: 110 YSGENTFG 117


>GSVIVT01012719001 assembled CDS
          Length = 141

 Score =  135 bits (339), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 62/70 (88%), Positives = 66/70 (94%)

Query: 1   YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVRNVLPPTAAMMSAIYEENKDEDGFLYMT 60
           YLVPADLTVGQFVYV+RKRIKLSAEKAIF+FV+N LP TAA+MSAIYEENKDEDGFLYMT
Sbjct: 71  YLVPADLTVGQFVYVIRKRIKLSAEKAIFVFVKNTLPSTAALMSAIYEENKDEDGFLYMT 130

Query: 61  YSGENTFGLS 70
           YSGENTFG  
Sbjct: 131 YSGENTFGFC 140


>GSVIVT01027638001 assembled CDS
          Length = 124

 Score =  129 bits (323), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/74 (82%), Positives = 66/74 (89%)

Query: 1   YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVRNVLPPTAAMMSAIYEENKDEDGFLYMT 60
           YLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV NVLPPT A+MSAIY+E KD DGFLY+T
Sbjct: 50  YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDADGFLYVT 109

Query: 61  YSGENTFGLSMKVQ 74
           YSGENTFG  +  Q
Sbjct: 110 YSGENTFGYQISPQ 123


>GSVIVT01001307001 assembled CDS
          Length = 122

 Score =  125 bits (315), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query: 1   YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVRNVLPPTAAMMSAIYEENKDEDGFLYMT 60
           YLVPADLTVGQFVYV+RKRIKLSAEKAIFIFV NVLPPT A+MS IY+E KD DGFLY+T
Sbjct: 50  YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSGIYDEKKDADGFLYVT 109

Query: 61  YSGENTFGLSM 71
           YSGENTFG  +
Sbjct: 110 YSGENTFGYEI 120


>GSVIVT01028202001 assembled CDS
          Length = 124

 Score = 91.3 bits (225), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 53/68 (77%)

Query: 1   YLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVRNVLPPTAAMMSAIYEENKDEDGFLYMT 60
           +LVP D++VGQF++++  R+ L+  KA+F+FV N LP TA++M  +YE  KDEDGFLYM+
Sbjct: 48  FLVPRDMSVGQFIHILSIRLHLTPGKALFVFVENTLPQTASLMDTVYESFKDEDGFLYMS 107

Query: 61  YSGENTFG 68
           YS E TFG
Sbjct: 108 YSSEKTFG 115