Jatropha Genome Database

JcCB0713651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0713651.10 - phase: 0 /TE/partial
         (944 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003599001 assembled CDS                                        70   4e-12
GSVIVT01037622001 assembled CDS                                        67   4e-11

>GSVIVT01003599001 assembled CDS
          Length = 801

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 44/67 (65%)

Query: 492 VNDILKKYERASGQAINLNKSSIFFSPNMSRELMTNISTILNVAGSIGGGTYLGLPSLIG 551
           ++ I  KYE  SGQAIN  KS IFFS N+S      IS IL V+  +  G YLGLPSLIG
Sbjct: 1   MHTIFAKYESNSGQAINFQKSGIFFSRNVSSLDRDFISNILGVSTPLNTGRYLGLPSLIG 60

Query: 552 KSKKQVF 558
           KSK+ VF
Sbjct: 61  KSKRAVF 67


>GSVIVT01037622001 assembled CDS
          Length = 571

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 357 RKNQGGACALKIDISKAYDRVNWEFLRGMMLRMGFYEKWVKWMMLCVTDVKYSVLLNGKE 416
           ++N+ G    K+D  KAYD +NW FL  +M +MGF EKW  W+  C++   YS+L+N   
Sbjct: 3   KRNESGVLC-KMDKEKAYDHINWNFLLLVMQKMGFGEKWAGWISWCISTATYSILINDSS 61

Query: 417 VGPIRPGRGLRQGDPLSPYLFLFCAK 442
           +G      GLR+G  L   ++L+  K
Sbjct: 62  MGFFHSTNGLRKGT-LYHLIYLYPPK 86