Jatropha Genome Database

JcCB0704851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0704851.10 + phase: 0 
         (78 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009903001 assembled CDS                                       127   1e-30
GSVIVT01024106001 assembled CDS                                        77   2e-15

>GSVIVT01009903001 assembled CDS
          Length = 272

 Score =  127 bits (318), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 57/75 (76%), Positives = 68/75 (90%)

Query: 1  MKASKRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGI 60
          MK  + PIHAVATW+R+QPPK+K FLAV SGIVA++FLRMVV DHD+LFVA+EAVHA+GI
Sbjct: 1  MKGKRTPIHAVATWVRKQPPKVKAFLAVASGIVAVIFLRMVVRDHDSLFVAAEAVHALGI 60

Query: 61 SVLIYKLMKEKTCAG 75
          S+LIYKL KE+TCAG
Sbjct: 61 SILIYKLTKERTCAG 75


>GSVIVT01024106001 assembled CDS
          Length = 241

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 39/42 (92%)

Query: 34 ALVFLRMVVHDHDNLFVASEAVHAVGISVLIYKLMKEKTCAG 75
          AL  LR+VVHDHDNLFVA+EAVH++GI VLIYKLMKEKTCAG
Sbjct: 3  ALALLRIVVHDHDNLFVAAEAVHSIGICVLIYKLMKEKTCAG 44