Jatropha Genome Database

JcCB0703101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0703101.10 + phase: 0 
         (258 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032523001 assembled CDS                                       210   4e-55
GSVIVT01009290001 assembled CDS                                       164   4e-41
GSVIVT01002010001 assembled CDS                                       147   7e-36
GSVIVT01033767001 assembled CDS                                        49   2e-06

>GSVIVT01032523001 assembled CDS
          Length = 662

 Score =  210 bits (535), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 110/219 (50%), Positives = 147/219 (67%), Gaps = 15/219 (6%)

Query: 1   MENP-NYSVVEINGPDAAFQPVEKSRGKNAKQVTWVLLLKAHRAVGCVAWLATFFWALLG 59
           +E P N+S+VEI G   +  P EK +  + KQ TWVLLLK HRA+ C++WLAT  W +  
Sbjct: 10  IEKPSNFSLVEITGSKTSMFP-EKEKAASPKQFTWVLLLKVHRALACLSWLATGAWTVFV 68

Query: 60  AIKKRLIFRQGVTVATEKLGKGKLVLRIIRVFLATSLLILAFEVVAYFKGWYYFENANLH 119
           A KKRL   +      E   +G+L  R IR F+  S++ L  EV+A+FK W      NL+
Sbjct: 69  AAKKRLALSE--IKEEEPTNRGRLY-RFIRAFVFISIVALFMEVIAHFKKW------NLN 119

Query: 120 IPRTLNLQGLLHMVYVAWLTFRADYIAPAIQVLSKFCVVLFLIQSLDRMILCLGCFWIKY 179
           + + L +QGL+   Y+AWL+FR DYIAP + +LSKFC+VLFLIQSLDR+ LC GCFWIK+
Sbjct: 120 LIQPLEVQGLVQWSYMAWLSFRVDYIAPLVLILSKFCIVLFLIQSLDRLFLCFGCFWIKH 179

Query: 180 KKIKPTINGDPFKSDDAEAQGYDYPMVLVQIPMCNEREV 218
           KK+KP ++ D +  +D    G  +PMVLVQIPMCNE+EV
Sbjct: 180 KKLKPEMDADAYDIED----GSSFPMVLVQIPMCNEKEV 214


>GSVIVT01009290001 assembled CDS
          Length = 647

 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/249 (39%), Positives = 134/249 (53%), Gaps = 62/249 (24%)

Query: 1   MENPNYSVVEINGPDA-----AFQP---VEKSRGKNAKQVTWVLLLKAHRAVGCVAWLAT 52
           MENPN+S+ E+ GP       A  P    +K RGKNA+Q+TWVLLLKAH+A GC+  +A+
Sbjct: 22  MENPNWSIAELEGPSDDDFLLAGSPNTNRDKGRGKNARQLTWVLLLKAHKAAGCLTSIAS 81

Query: 53  FFWALLGAIKKRLIFRQGVTVATEKLGKGKLVLRIIRVFLATSLLILAFEVVAYFKGWYY 112
             + L  A                             VFL  S+++L FEV AYFK  Y 
Sbjct: 82  AMFGLAAA-----------------------------VFLWLSVVLLVFEVAAYFKAPY- 111

Query: 113 FENANLHIPRTLNLQGLLHMVYVAWLTFRADYIAPAIQVLSKFCVVLFLIQSLDRMILCL 172
                        ++ + + +Y  W+  R +Y+AP +Q L+  C+VLFLIQS+DR++LCL
Sbjct: 112 ------------GVKDIFNSLYSRWVLIRVEYLAPPLQFLANACIVLFLIQSVDRLVLCL 159

Query: 173 GCFWIKYKKIKPTINGDPFKSDDAEAQGYDYPMVLVQIPMCNEREVKDRAFIPVYFSCAS 232
           GCFWIK+KKIKP   G     +  +  GY +P VLVQIPMCNE+EV  +          S
Sbjct: 160 GCFWIKFKKIKPVPKGT-VDLESGDGNGY-FPRVLVQIPMCNEKEVYQQ----------S 207

Query: 233 LILCLCLNW 241
           +  C  L+W
Sbjct: 208 IAACCNLDW 216


>GSVIVT01002010001 assembled CDS
          Length = 630

 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 93/222 (41%), Positives = 140/222 (63%), Gaps = 9/222 (4%)

Query: 6   YSVVEINGPDAAFQPVEKSRGKNAKQVTWVLLLKAHRAVGCVAWLATFFWALLGAIKKRL 65
           ++ VEI+ P A    V+K R ++A+Q++WV LLK  +    +A+L+  F A+L    +R+
Sbjct: 34  FTSVEIHTPTAD-PAVDKERTRSARQLSWVCLLKLQQLASSIAYLSNGFVAILRTANRRI 92

Query: 66  IFRQGVTVATEKLGKGKLVLRIIRVFLATSLLILAFEVVAYFKGWYYFENANLHIPRTLN 125
                   ++    +   +   I+VFL   L++L FE+VAYFKGW+ F   +L     + 
Sbjct: 93  ASSSVAADSSRSESR---LYHAIKVFLVVVLVLLLFELVAYFKGWH-FSPPSLS-SAEVE 147

Query: 126 LQGLLHMVYVAWLTFRADYIAPAIQVLSKFCVVLFLIQSLDRMILCLGCFWIKYKKIKPT 185
           + GL+ +VY  WL  RA+Y+AP +Q L+  C+VLFLIQS+DR++L LGCFWIK++K+KP 
Sbjct: 148 VLGLVELVYANWLKIRANYLAPPLQSLTNVCIVLFLIQSVDRIVLMLGCFWIKFRKLKPV 207

Query: 186 INGDPFKSDDAEAQG-YDYPMVLVQIPMCNEREVKDRAFIPV 226
              +   S+++E Q   DYPMVLVQIPMCNEREV  ++   V
Sbjct: 208 AVME--FSENSEGQNVQDYPMVLVQIPMCNEREVYQQSIAAV 247


>GSVIVT01033767001 assembled CDS
          Length = 540

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 135 VAWLTFRADYIAPAIQVLSKFCVVLFLIQSLDRMILCLGCFWIKYKKIKPT--INGDPFK 192
           V W   +A  I P + +    C+ + L+   +R+ L +    +K    KP      +P K
Sbjct: 27  VVWSQIKAPVIVPLMSIAVAVCLAMSLMLFFERVYLSIVIVLVKLFGRKPDKRYKWEPMK 86

Query: 193 SDDAEAQGYDYPMVLVQIPMCNEREV 218
            DD E     YPMVLVQIPM NE+EV
Sbjct: 87  -DDVELGNSAYPMVLVQIPMYNEKEV 111