Jatropha Genome Database

JcCB0701471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0701471.10 + phase: 0 /partial/short
         (30 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033965001 assembled CDS                                        62   4e-11
GSVIVT01002021001 assembled CDS                                        62   6e-11
GSVIVT01024747001 assembled CDS                                        60   3e-10
GSVIVT01012325001 assembled CDS                                        49   5e-07

>GSVIVT01033965001 assembled CDS
          Length = 242

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/29 (89%), Positives = 26/29 (89%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSYSPAA  FLFLVQWTDCHLAGALG 
Sbjct: 37 MRLSYSPAAHLFLFLVQWTDCHLAGALGL 65


>GSVIVT01002021001 assembled CDS
          Length = 242

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/29 (86%), Positives = 26/29 (89%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MR+SYSPAA  FLFLVQWTDCHLAGALG 
Sbjct: 37 MRMSYSPAAHLFLFLVQWTDCHLAGALGL 65


>GSVIVT01024747001 assembled CDS
          Length = 243

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/29 (86%), Positives = 27/29 (93%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSYSPAA+ FLFLVQWTDC+LAGALG 
Sbjct: 37 MRLSYSPAARLFLFLVQWTDCNLAGALGL 65


>GSVIVT01012325001 assembled CDS
          Length = 78

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/27 (77%), Positives = 22/27 (81%)

Query: 3  LSYSPAAQFFLFLVQWTDCHLAGALGF 29
          +SYS  A  FLFLVQWTDCHLAGALG 
Sbjct: 1  MSYSLVAHLFLFLVQWTDCHLAGALGL 27