Jatropha Genome Database

JcCB0700881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0700881.10 + phase: 2 /partial
         (139 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009245001 assembled CDS                                       265   7e-72
GSVIVT01035647001 assembled CDS                                       211   8e-56
GSVIVT01025636001 assembled CDS                                       105   5e-24
GSVIVT01022064001 assembled CDS                                        47   3e-06

>GSVIVT01009245001 assembled CDS
          Length = 381

 Score =  265 bits (676), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 120/139 (86%), Positives = 130/139 (93%)

Query: 1   RFGAWPVAMLAQSKNKAILEGPVCNGSHVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWD 60
           RFG WPVAMLAQSKNKAILEGPVCNGS VIGWHTNEKSKRLRRFHVDMSGFAFNSTILWD
Sbjct: 243 RFGTWPVAMLAQSKNKAILEGPVCNGSQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWD 302

Query: 61  PKRWRRPFSSAIRQLDTVKEGFQETTFIEQVIEDESQIESVPPGCSRILNWHLHLDAHHL 120
           PK+WRRP S+ I+QLDTVKEGFQETTFIEQ++EDESQ+E  P GCSRI+NWHLHL+A +L
Sbjct: 303 PKKWRRPTSAPIQQLDTVKEGFQETTFIEQLVEDESQMEGTPAGCSRIMNWHLHLEARNL 362

Query: 121 VYPRGWLFQKNLDVILPIK 139
           VYPRGWL QKNLDV+LPIK
Sbjct: 363 VYPRGWLLQKNLDVVLPIK 381


>GSVIVT01035647001 assembled CDS
          Length = 448

 Score =  211 bits (537), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 94/135 (69%), Positives = 110/135 (81%)

Query: 1   RFGAWPVAMLAQSKNKAILEGPVCNGSHVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWD 60
           RFG W VA L +SK+K +LEGPVCNGS VIGWHTNE ++R RRFH +MSGFAFNSTILWD
Sbjct: 310 RFGTWTVAKLMESKSKTLLEGPVCNGSQVIGWHTNEMTRRFRRFHTEMSGFAFNSTILWD 369

Query: 61  PKRWRRPFSSAIRQLDTVKEGFQETTFIEQVIEDESQIESVPPGCSRILNWHLHLDAHHL 120
           PKRW RP    IRQLDTVKEGFQ +TFIE+++EDESQ+E +P GCS I+ WHLHL++ H 
Sbjct: 370 PKRWHRPTLEPIRQLDTVKEGFQVSTFIERLVEDESQMEGLPEGCSTIMVWHLHLESSHS 429

Query: 121 VYPRGWLFQKNLDVI 135
            YPR WL + NLDVI
Sbjct: 430 FYPREWLMKNNLDVI 444


>GSVIVT01025636001 assembled CDS
          Length = 292

 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 79/117 (67%), Gaps = 10/117 (8%)

Query: 2   FGAWPVAMLAQSKNKAILEGPVCNGSHVIGWHTNEKSKRLR-RFHVDMSGFAFNSTILWD 60
           FG WP+A L+ ++NK I+EGPVC+ S VIGWH  + +     R  + +SGF+FNS+ILWD
Sbjct: 163 FGTWPMASLSANRNKVIMEGPVCDSSQVIGWHLKKMNNETETRSPLHISGFSFNSSILWD 222

Query: 61  PKRWRRPFSSAIRQLDTVKEGFQETTFIEQV-IEDESQIESVP-PGCSRILNWHLHL 115
           P+RW RP S      +++K       F+++V +EDES+++ +P   CSRIL W+LH+
Sbjct: 223 PERWGRPSSVQDNSQNSIK-------FVKEVALEDESKLKGIPQEDCSRILLWNLHI 272


>GSVIVT01022064001 assembled CDS
          Length = 475

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 20/137 (14%)

Query: 19  LEGPVCNGSH-VIGWHT--------------NEKSKRLRRFHVDMSGFAFNSTILWDPKR 63
           ++GP CN S  ++GWH               ++++  L R  ++ SGF  NS +LW    
Sbjct: 281 VQGPACNSSEKLVGWHIFNSLPYVGNGATYIDDRATVLPR-KLEWSGFVLNSRLLWKAAE 339

Query: 64  WRRPFSSAIRQLDTVKEGFQETTFIEQVIEDESQIESVPPGCSRILNWHLHLDAH-HLVY 122
            R  +   + +LD V+E  +       +++D S +E +     ++L W L ++A     +
Sbjct: 340 DRPEWVKDLDKLDGVREEIESPL---SLLKDPSMVEPLGSCGRKVLLWWLRVEARTDSKF 396

Query: 123 PRGWLFQKNLDVILPIK 139
           P  W+    L+V +P K
Sbjct: 397 PARWIIDPPLEVTVPAK 413