Jatropha Genome Database

JcCB0699651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0699651.10 - phase: 0 /partial
         (155 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019637001 assembled CDS                                       297   1e-81
GSVIVT01038605001 assembled CDS                                       291   1e-79
GSVIVT01000152001 assembled CDS                                        54   4e-08

>GSVIVT01019637001 assembled CDS
          Length = 459

 Score =  297 bits (761), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 139/155 (89%), Positives = 152/155 (98%)

Query: 1   MEIFYFMVFGGLSAVVAALELSKTSRDRINTSTAFNAFKNNYLVVYSLMMAGDWLQGPYV 60
           ME+FYF+VFGGL+AVVAALELSKTS+DRINTSTAF +FKNNYL+VYSLMMAGDWLQGPYV
Sbjct: 1   MEVFYFLVFGGLAAVVAALELSKTSKDRINTSTAFTSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSEYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRRRACVTYCITYILSCMTKH 120
           YYLYS+YG+GKG+IGQLFIAGFGSSMLFGTIVGSLADKQGR+RACVTYCITYILSC+TKH
Sbjct: 61  YYLYSQYGYGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query: 121 SPDYKVLMLGRVLGGIATSLLFSAFESWLVAEHFK 155
           SP YK+LMLGR+LGGIATSLLFSAFESWLVAEH K
Sbjct: 121 SPQYKILMLGRILGGIATSLLFSAFESWLVAEHNK 155


>GSVIVT01038605001 assembled CDS
          Length = 460

 Score =  291 bits (744), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 134/155 (86%), Positives = 149/155 (96%)

Query: 1   MEIFYFMVFGGLSAVVAALELSKTSRDRINTSTAFNAFKNNYLVVYSLMMAGDWLQGPYV 60
           ME+FYF+VFG LSAVVA +ELSK ++DR+NT+TAFN+FKNNYL+VYSLMMAGDWLQGPYV
Sbjct: 1   MEVFYFLVFGALSAVVAVIELSKNNKDRVNTTTAFNSFKNNYLLVYSLMMAGDWLQGPYV 60

Query: 61  YYLYSEYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRRRACVTYCITYILSCMTKH 120
           Y+LYS YGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGR+RACVTYCITYILSC+TKH
Sbjct: 61  YFLYSTYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKH 120

Query: 121 SPDYKVLMLGRVLGGIATSLLFSAFESWLVAEHFK 155
           SP Y++LM+GRVLGGIATSLLFSAFESWLVAEH K
Sbjct: 121 SPQYRILMVGRVLGGIATSLLFSAFESWLVAEHNK 155


>GSVIVT01000152001 assembled CDS
          Length = 448

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 63/125 (50%)

Query: 31  TSTAFNAFKNNYLVVYSLMMAGDWLQGPYVYYLYSEYGFGKGEIGQLFIAGFGSSMLFGT 90
           TS +F  F+ N+L+++SL    + +   +  +  + YG  + ++      G   +  F  
Sbjct: 46  TSPSFLRFQRNFLLIFSLASGMEGVSSVFGEFELAYYGVSREQMVVSLCVGCLVAFFFSA 105

Query: 91  IVGSLADKQGRRRACVTYCITYILSCMTKHSPDYKVLMLGRVLGGIATSLLFSAFESWLV 150
            +G L D  G+++AC+++C+ ++   + +       + L  +   +ATS+   +FE+W+ 
Sbjct: 106 FLGMLCDLIGQKKACLSFCVLHLSVGIWRRISLQPSVWLANICLSLATSIFSFSFETWMT 165

Query: 151 AEHFK 155
            EH K
Sbjct: 166 VEHDK 170