Jatropha Genome Database

JcCB0698781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0698781.10 - phase: 1 /pseudo/partial
         (207 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026897001 assembled CDS                                       207   4e-54

>GSVIVT01026897001 assembled CDS
          Length = 348

 Score =  207 bits (526), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 124/167 (74%), Gaps = 1/167 (0%)

Query: 38  LTCRYSLSVNGHLLNQLGEGATECGGYYSKLLQEYDAIIVSSSFV-DMFSIPTSQEPGAK 96
           +T RYSLS+NGH+L+QLGEG  E GGYYS+L+QEYDAII+S + V + FS P SQEPGA 
Sbjct: 143 VTLRYSLSINGHILDQLGEGVEEAGGYYSQLVQEYDAIILSPTTVTEKFSFPASQEPGAN 202

Query: 97  QPLCVITVTARSSPIQIPSLAEDTASGIVVFAEKETTIRPETAQKGVETVVLDQVSLIEI 156
           QPL ++   +  SP QIP    +  S +++FA+ ET + PE  QKG+ETVVLDQ++L  +
Sbjct: 203 QPLHILIAKSPISPNQIPIPHTEATSKVIIFADNETAVEPEMVQKGIETVVLDQINLNAV 262

Query: 157 LEYCKLQGLCSVLLDLRGSLGELEGLFNDGIEHNMLQKVVVEVLPLW 203
           LEYCK QGLCS+LLDLRG+ G  E L    +E N+LQKVVVEVLP W
Sbjct: 263 LEYCKRQGLCSILLDLRGNFGYFEDLLKQSLEENLLQKVVVEVLPFW 309