Jatropha Genome Database

JcCB0698361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0698361.10 - phase: 0 
         (134 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007165001 assembled CDS                                        80   3e-16
GSVIVT01009299001 assembled CDS                                        50   3e-07

>GSVIVT01007165001 assembled CDS
          Length = 558

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 78/141 (55%), Gaps = 23/141 (16%)

Query: 1   MDFGVVGLEELVGSDNVSSGFASLASSDRETKQELYGSGFLKQERSDTTEHDWRSSKLSK 60
           MDFG+VGLE LVG ++V    A    ++ ETKQ   GSG  KQE S + + DW  SK+++
Sbjct: 12  MDFGLVGLEGLVGPEDV----APSQVAETETKQMGLGSGLGKQEISGSLQDDWADSKMAR 67

Query: 61  TE------SMLLPQRNTLLKSNTT----DGHRQQQMLSFSCPKSE-------GLTVERSP 103
           T+      +M L Q  T L  + +    DG  QQ MLSFS PKSE       G  V+R  
Sbjct: 68  TDDFGASITMSL-QHGTSLLRSNSLLSDDGGAQQHMLSFSSPKSEMSFLGKDGRLVDRGA 126

Query: 104 RNASFPSFHLSTSSAYNRRTG 124
           +  +FP ++  T SAYNR  G
Sbjct: 127 KTTAFP-YYQPTPSAYNRNAG 146


>GSVIVT01009299001 assembled CDS
          Length = 475

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 30/39 (76%), Gaps = 1/39 (2%)

Query: 86  MLSFSCPKSEGLTVERSPRNASFPSFHLSTSSAYNRRTG 124
           MLSFS PKSE L +ERS +NA FP +H  TSSAYNR TG
Sbjct: 1   MLSFSSPKSEPLFMERSSQNAIFPYYH-HTSSAYNRNTG 38