Jatropha Genome Database

JcCB0697191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0697191.10 - phase: 1 /partial
         (132 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025376001 assembled CDS                                       225   4e-60

>GSVIVT01025376001 assembled CDS
          Length = 499

 Score =  225 bits (574), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 108/132 (81%), Positives = 112/132 (84%)

Query: 1   KACENVTQPLKFLYPLXXXXXXXXXXXXRSYGAQGVEYSEQAEKQIEMYSRQGFSGLPIC 60
           +ACE V QPLKFLYPL            +SYGA GVEYSEQAEKQIEMYSRQGFS LPIC
Sbjct: 368 RACETVAQPLKFLYPLDISIKEKIEAIAKSYGASGVEYSEQAEKQIEMYSRQGFSNLPIC 427

Query: 61  MAKTQYSFSHNASEKGAPSGFVLPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDID 120
           MAKTQYSFSH AS KGAP+GFVLPIRDVRASIGA FIYPLVGTMSTMPGLPTRPCFY+ID
Sbjct: 428 MAKTQYSFSHTASVKGAPTGFVLPIRDVRASIGARFIYPLVGTMSTMPGLPTRPCFYEID 487

Query: 121 LDTATGKVIGLS 132
           LDT TGKVIGLS
Sbjct: 488 LDTTTGKVIGLS 499