Jatropha Genome Database

JcCB0697011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0697011.10 + phase: 0 
         (151 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026969001 assembled CDS                                        78   2e-15
GSVIVT01018300001 assembled CDS                                        62   8e-11
GSVIVT01008553001 assembled CDS                                        60   4e-10
GSVIVT01022259001 assembled CDS                                        60   5e-10
GSVIVT01011472001 assembled CDS                                        59   8e-10
GSVIVT01034968001 assembled CDS                                        57   3e-09
GSVIVT01033063001 assembled CDS                                        57   5e-09
GSVIVT01010525001 assembled CDS                                        56   7e-09
GSVIVT01020864001 assembled CDS                                        55   9e-09
GSVIVT01012196001 assembled CDS                                        55   1e-08
GSVIVT01019109001 assembled CDS                                        55   1e-08
GSVIVT01022245001 assembled CDS                                        55   1e-08
GSVIVT01021397001 assembled CDS                                        55   2e-08
GSVIVT01028147001 assembled CDS                                        54   3e-08
GSVIVT01035426001 assembled CDS                                        54   4e-08
GSVIVT01001332001 assembled CDS                                        52   1e-07
GSVIVT01024624001 assembled CDS                                        51   2e-07
GSVIVT01037775001 assembled CDS                                        50   3e-07
GSVIVT01007006001 assembled CDS                                        50   3e-07
GSVIVT01030258001 assembled CDS                                        50   4e-07
GSVIVT01014854001 assembled CDS                                        49   7e-07
GSVIVT01033194001 assembled CDS                                        47   4e-06
GSVIVT01030046001 assembled CDS                                        46   5e-06

>GSVIVT01026969001 assembled CDS
          Length = 201

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 51  DIDWVSLLSGSLKFGDQNHHQPPVARDNIGENVNTNKIKKGGCKAKRVVPQ-RIAFHTRS 109
           DIDW +LLS      D        +     E   + K ++ G +  R   + R AF TRS
Sbjct: 58  DIDWATLLSAQTGLSDLYPRAEGTSSVMAEEEKGSIKDRRKGVRTTRKATRPRFAFQTRS 117

Query: 110 ADDILDDGYRWRKYGQKVVKNSIHQRYICVCV 141
            DDILDDGYRWRKYGQK VKNSI+ R    C 
Sbjct: 118 VDDILDDGYRWRKYGQKAVKNSIYPRSYYRCT 149


>GSVIVT01018300001 assembled CDS
          Length = 228

 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 1/54 (1%)

Query: 89  KKGGCKAKRVVPQ-RIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVCV 141
           +K   KA+R + + R  F TRS  D+LDDGY+WRKYGQKVVKNS+H R    C 
Sbjct: 128 EKTKVKARRKLREPRFCFQTRSEVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCT 181


>GSVIVT01008553001 assembled CDS
          Length = 151

 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 31/47 (65%)

Query: 96  KRVVPQRIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVCVW 142
           K++   R AF TRS  DILDDGYRWRKYGQK VKN+   R    C +
Sbjct: 53  KKIRKHRFAFQTRSHVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTY 99


>GSVIVT01022259001 assembled CDS
          Length = 226

 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 77  DNIGENVNTNKIKKGGCKAKRVVPQ-RIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQR 135
           D++G  V+  K+KK   KA+R V + R  F T S  D+LDDGY+WRKYGQKVVKN+ H R
Sbjct: 115 DHLG--VSAMKMKK--IKARRKVREPRFCFKTMSEVDVLDDGYKWRKYGQKVVKNTQHPR 170

Query: 136 YICVCV 141
               C 
Sbjct: 171 SYYRCT 176


>GSVIVT01011472001 assembled CDS
          Length = 889

 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 30/48 (62%)

Query: 96  KRVVPQRIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVCVWL 143
           K V   RI   TRS  D+LDDGYRWRKYGQKVVK + H R    C  L
Sbjct: 756 KTVTEPRIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSL 803


>GSVIVT01034968001 assembled CDS
          Length = 309

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 32/58 (55%)

Query: 84  NTNKIKKGGCKAKRVVPQRIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVCV 141
           N  ++K      KR    R AF T+S  D LDDGYRWRKYGQK VKNS   R    C 
Sbjct: 124 NKQQLKPKKKNQKRQREPRFAFITKSEVDHLDDGYRWRKYGQKAVKNSPFPRSYYRCT 181


>GSVIVT01033063001 assembled CDS
          Length = 182

 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 27/40 (67%)

Query: 102 RIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVCV 141
           R AF TRS  DILDDGYRWRKYGQK VKN+   R    C 
Sbjct: 92  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCT 131


>GSVIVT01010525001 assembled CDS
          Length = 189

 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 27/40 (67%)

Query: 102 RIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVCV 141
           R AF TRS  DILDDGYRWRKYGQK VKN+   R    C 
Sbjct: 98  RYAFQTRSQVDILDDGYRWRKYGQKAVKNNRFPRSYYRCT 137


>GSVIVT01020864001 assembled CDS
          Length = 311

 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 16/81 (19%)

Query: 77  DNIGENVNTNKIKKGGCK----------------AKRVVPQRIAFHTRSADDILDDGYRW 120
           ++ G++ +   ++ GGC+                 KR    R AF T+S  D L+DGYRW
Sbjct: 119 EDSGKSKHKPDLQGGGCEDGDENSKKANKSKKKGEKRPKEPRFAFMTKSEIDHLEDGYRW 178

Query: 121 RKYGQKVVKNSIHQRYICVCV 141
           RKYGQK VKNS + R    C 
Sbjct: 179 RKYGQKAVKNSPYPRSYYRCT 199


>GSVIVT01012196001 assembled CDS
          Length = 283

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 29/46 (63%)

Query: 96  KRVVPQRIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVCV 141
           KR+   R AF T+S  D L+DGYRWRKYGQK VKNS   R    C 
Sbjct: 121 KRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCT 166


>GSVIVT01019109001 assembled CDS
          Length = 486

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 60  GSLKFGDQNHHQPPVARDNIGENVNTNKIKKGGCKAKRVVPQRIAFHTRSADDILDDGYR 119
           GS+  GD    +   ++    EN  T K       ++ V   R+        D+L+DGYR
Sbjct: 187 GSISLGDDADDEGSQSKKRKKENCMTEK----NLASRTVREPRVVVQVECESDVLNDGYR 242

Query: 120 WRKYGQKVVKNSIHQRYICVCV 141
           WRKYGQKVVK ++H R    C 
Sbjct: 243 WRKYGQKVVKGNLHPRNYYKCT 264


>GSVIVT01022245001 assembled CDS
          Length = 193

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 82  NVNTNKIKKGGCKAKRV-VPQRIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVC 140
           N  TN   K G K K+  +  R+AF T+S  +I+DDG++WRKYG+K VKNS + R    C
Sbjct: 72  NTTTNMECKDGAKRKKTDLGFRVAFKTKSDLEIMDDGFKWRKYGKKSVKNSPNPRNYYKC 131

Query: 141 V 141
            
Sbjct: 132 A 132


>GSVIVT01021397001 assembled CDS
          Length = 319

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 28/46 (60%)

Query: 96  KRVVPQRIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVCV 141
           KR    R AF T+S  D L+DGYRWRKYGQK VKNS   R    C 
Sbjct: 162 KRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCT 207


>GSVIVT01028147001 assembled CDS
          Length = 302

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 28/46 (60%)

Query: 96  KRVVPQRIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVCV 141
           KR    R AF T+S  D L+DGYRWRKYGQK VKNS   R    C 
Sbjct: 130 KRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCT 175


>GSVIVT01035426001 assembled CDS
          Length = 166

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 34/47 (72%)

Query: 94  KAKRVVPQRIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVC 140
           + K+   +R+AF T+S  +ILDDG++WRKYG+K+VKNS + R    C
Sbjct: 83  QKKKEAKERVAFITKSEIEILDDGFKWRKYGKKMVKNSPNPRNYYRC 129


>GSVIVT01001332001 assembled CDS
          Length = 435

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 28/46 (60%)

Query: 96  KRVVPQRIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVCV 141
           + V   RI   T S  D+LDDGYRWRKYGQKVVK + + R    C 
Sbjct: 341 RTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCT 386


>GSVIVT01024624001 assembled CDS
          Length = 570

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 29/47 (61%)

Query: 95  AKRVVPQRIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVCV 141
           ++ V   R+   T S  DILDDGYRWRKYGQKVVK + + R    C 
Sbjct: 413 SRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT 459


>GSVIVT01037775001 assembled CDS
          Length = 552

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 87  KIKKGGCKAKRVV----PQRIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVCV 141
           K++ GG     VV      R+   T S  DILDDGYRWRKYGQKVV+ + + R    C 
Sbjct: 336 KMEIGGIDVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCT 394


>GSVIVT01007006001 assembled CDS
          Length = 550

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 26/40 (65%)

Query: 102 RIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVCV 141
           R+   T S  DILDDGYRWRKYGQKVVK + + R    C 
Sbjct: 348 RVVVQTVSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCT 387


>GSVIVT01030258001 assembled CDS
          Length = 513

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 14/96 (14%)

Query: 59  SGSLKFGDQNHHQ-PPVARDNIGENVNTNKIKK----------GGCKAKRVVPQRIAFHT 107
           + S+  G+ +  Q  P++R   G++ N  + K+             +++ V   R+   T
Sbjct: 288 NSSVSIGEDDFDQNSPMSRSG-GDDENEREAKRWKGEYENEAISASESRTVKEPRVVVQT 346

Query: 108 RSADDILDDGYRWRKYGQKVVKNSIHQR--YICVCV 141
            S  DILDDGYRWRKYGQKVVK + + R  Y C  +
Sbjct: 347 TSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSI 382


>GSVIVT01014854001 assembled CDS
          Length = 622

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/39 (58%), Positives = 26/39 (66%)

Query: 102 RIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVC 140
           R+   T S  DILDDGYRWRKYGQKVVK + + R    C
Sbjct: 427 RVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKC 465


>GSVIVT01033194001 assembled CDS
          Length = 156

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 29/38 (76%)

Query: 103 IAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVC 140
           +AF T+S  D++DDG++WRKYG+K+VK+S + R    C
Sbjct: 56  VAFRTKSELDVMDDGFKWRKYGKKMVKSSPNPRNYYRC 93


>GSVIVT01030046001 assembled CDS
          Length = 364

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 26/39 (66%)

Query: 102 RIAFHTRSADDILDDGYRWRKYGQKVVKNSIHQRYICVC 140
           RI   T S  DI++DGYRWRKYGQK+VK + + R    C
Sbjct: 229 RIVVQTVSEVDIVNDGYRWRKYGQKLVKGNTNPRSYYRC 267