Jatropha Genome Database

JcCB0696171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0696171.10 + phase: 0 /pseudo/partial
         (83 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008947001 assembled CDS                                        97   2e-21
GSVIVT01037118001 assembled CDS                                        75   5e-15

>GSVIVT01008947001 assembled CDS
          Length = 301

 Score = 96.7 bits (239), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/60 (75%), Positives = 47/60 (78%)

Query: 1   LAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIK 60
           LAQKELQKINMYKAPRDKLVCILNCCKV             E+PPGADEFLPVLIYVT+K
Sbjct: 144 LAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNEDPPGADEFLPVLIYVTLK 203


>GSVIVT01037118001 assembled CDS
          Length = 245

 Score = 75.5 bits (184), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 1   LAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIK 60
           LA+KELQK+N +KAPR+KL+CILNCC+V                 GAD+FLPVLIYVTIK
Sbjct: 139 LAEKELQKVNAFKAPREKLLCILNCCRVINNLLLNAAMSENHILAGADDFLPVLIYVTIK 198

Query: 61  VRSLNMNYLLSLLQAC 76
             S +   LLS +Q  
Sbjct: 199 ASS-HWRILLSCIQTS 213