Jatropha Genome Database

JcCB0696091.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0696091.10 + phase: 0 /pseudo
         (153 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037715001 assembled CDS                                       104   2e-23
GSVIVT01007243001 assembled CDS                                       100   3e-22

>GSVIVT01037715001 assembled CDS
          Length = 545

 Score =  104 bits (259), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/56 (83%), Positives = 47/56 (83%)

Query: 1  MEISSGPIGSCSKDNQKIYLEWFNFADSDGDGRITGNDAIKFFGMSNLSRQDLKQV 56
          MEI SGPI SCSK NQ IY EWFNFADSD DGRITGNDAIKFF MSNL R DLKQV
Sbjct: 1  MEIDSGPISSCSKQNQMIYQEWFNFADSDSDGRITGNDAIKFFAMSNLPRPDLKQV 56


>GSVIVT01007243001 assembled CDS
          Length = 575

 Score =  100 bits (249), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/56 (80%), Positives = 48/56 (85%)

Query: 1  MEISSGPIGSCSKDNQKIYLEWFNFADSDGDGRITGNDAIKFFGMSNLSRQDLKQV 56
          MEI+S PI SCSK NQKIY EWFN+ADSD DGRITGNDA KFF MSNLSR +LKQV
Sbjct: 1  MEIASVPISSCSKHNQKIYQEWFNYADSDNDGRITGNDATKFFAMSNLSRSELKQV 56