Jatropha Genome Database

JcCB0695691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0695691.10 - phase: 1 /TE/partial
         (117 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000087001 assembled CDS                                       135   5e-33

>GSVIVT01000087001 assembled CDS
          Length = 1732

 Score =  135 bits (339), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 78/95 (82%), Gaps = 3/95 (3%)

Query: 26  SDSYTNAIALALEXXXXXXXXXXXXRQYVHGCSLVRARKFYGYNSSEELFVKIYL---YY 82
           +D+YT+A++L +E            RQ+VHGCSLVRA+ FYGY+SSEELFVKIYL   Y+
Sbjct: 85  ADTYTHAVSLGVEKALKLKGNAGSKRQHVHGCSLVRAKNFYGYHSSEELFVKIYLNISYH 144

Query: 83  PHDVSRAANLLLGGAVLDKSLKPHESHIPFILQFM 117
           PHDVSRAANLLLGG+VLDKSL+PHESHIPF+LQF+
Sbjct: 145 PHDVSRAANLLLGGSVLDKSLQPHESHIPFLLQFL 179