Jatropha Genome Database

JcCB0695521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0695521.10 - phase: 0 /pseudo/partial
         (154 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002932001 assembled CDS                                       111   2e-25
GSVIVT01006537001 assembled CDS                                        54   3e-08

>GSVIVT01002932001 assembled CDS
          Length = 117

 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 75/100 (75%), Gaps = 4/100 (4%)

Query: 58  LSECNEICYKDPVFKDQQWSAYIDRSPGAASYSEECFHACVAGCGYKFEIEPDKVDQVRP 117
           L ECNEICYKDPVFKDQQWSAYIDRSPG+ S+S+ECF+ACV+GCG+KFEI P++V +VR 
Sbjct: 19  LEECNEICYKDPVFKDQQWSAYIDRSPGSPSHSKECFNACVSGCGFKFEISPEEVAKVRS 78

Query: 118 NRPSKPPPSVKPAHIQKPPPIASKPDEP---AEDIPCTSA 154
            R  + P +V+      P P+ +  D P    ED+PCTSA
Sbjct: 79  KRLPE-PLTVQEPPPSTPMPMPTPTDGPCATTEDVPCTSA 117


>GSVIVT01006537001 assembled CDS
          Length = 81

 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 4/67 (5%)

Query: 91  EECFHACVAGCGYKFEIEPDKVDQVRPNRPSKPPPSVKPAHIQKPPPIASKPDEP---AE 147
           +ECF+ACV+GCG+KFEI P++V +VR  R  + P +V+      P P+ +  D P    E
Sbjct: 16  QECFNACVSGCGFKFEISPEEVAKVRSKRLPE-PLTVQEPPPSTPMPMPTPTDRPCATTE 74

Query: 148 DIPCTSA 154
           D+PCTSA
Sbjct: 75  DVPCTSA 81