Jatropha Genome Database

JcCB0694581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0694581.10 - phase: 0 /partial
         (87 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018624001 assembled CDS                                       127   9e-31
GSVIVT01001270001 assembled CDS                                       106   2e-24
GSVIVT01003808001 assembled CDS                                       100   2e-22
GSVIVT01016181001 assembled CDS                                        83   3e-17
GSVIVT01012709001 assembled CDS                                        68   7e-13
GSVIVT01005373001 assembled CDS                                        68   8e-13
GSVIVT01004401001 assembled CDS                                        68   8e-13
GSVIVT01012708001 assembled CDS                                        67   1e-12
GSVIVT01005055001 assembled CDS                                        67   2e-12
GSVIVT01008707001 assembled CDS                                        67   2e-12
GSVIVT01030441001 assembled CDS                                        65   8e-12
GSVIVT01023902001 assembled CDS                                        64   2e-11
GSVIVT01005054001 assembled CDS                                        63   2e-11

>GSVIVT01018624001 assembled CDS
          Length = 592

 Score =  127 bits (319), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 54/79 (68%), Positives = 65/79 (82%)

Query: 1   VYPGGWTAILVSLDNVGVWNLRVENLDRWYLGHETYMRIINPEENGETEMGPPDNVRYCG 60
           V+PG WTA+L+SLDN G WNLRVENLDRWYLG ETYMRI+NPEENGETE   P N+ YCG
Sbjct: 492 VFPGAWTAVLISLDNAGAWNLRVENLDRWYLGQETYMRIVNPEENGETEFSAPSNILYCG 551

Query: 61  ALRSLQKTDNSAAISILIS 79
           AL++LQ + NS+   +LI+
Sbjct: 552 ALKNLQGSQNSSNAPMLIT 570


>GSVIVT01001270001 assembled CDS
          Length = 591

 Score =  106 bits (265), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/67 (65%), Positives = 54/67 (80%)

Query: 1   VYPGGWTAILVSLDNVGVWNLRVENLDRWYLGHETYMRIINPEENGETEMGPPDNVRYCG 60
           V+PG WTAIL+SLDNVGVWNLR ENLD W+LG ETY+R++NPE   +TE+  PDN  +CG
Sbjct: 492 VFPGAWTAILISLDNVGVWNLRAENLDSWHLGQETYVRVVNPEATNKTELPMPDNALFCG 551

Query: 61  ALRSLQK 67
           AL  +QK
Sbjct: 552 ALSKMQK 558


>GSVIVT01003808001 assembled CDS
          Length = 595

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/67 (65%), Positives = 52/67 (77%)

Query: 1   VYPGGWTAILVSLDNVGVWNLRVENLDRWYLGHETYMRIINPEENGETEMGPPDNVRYCG 60
           V+PG WTAILVSLDNVG+WNLR ENL+ WYLG E Y+ ++NPE   +TE+  PDN  YCG
Sbjct: 493 VFPGAWTAILVSLDNVGIWNLRTENLNTWYLGQEVYVNVVNPEITDKTELPLPDNAIYCG 552

Query: 61  ALRSLQK 67
            L SLQK
Sbjct: 553 VLSSLQK 559


>GSVIVT01016181001 assembled CDS
          Length = 525

 Score = 82.8 bits (203), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 1   VYPGGWTAILVSLDNVGVWNLRVENLDRWYLGHETYMRIINPEENGETEMGPPDNVRYCG 60
           VYPGGWTA+   LDN G+WNLR +NL  WYLG E Y+R+ +P+ N   E  PP+N+  CG
Sbjct: 436 VYPGGWTAVYAFLDNPGMWNLRSQNLKNWYLGQELYVRVYDPDPNPAKERPPPENILLCG 495

Query: 61  ALRSLQKTDNSAAISILISKLELYISL 87
              S   T  S   +    +L+LY+ L
Sbjct: 496 QYLS---TSFSLPYASQFPRLKLYLWL 519


>GSVIVT01012709001 assembled CDS
          Length = 540

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 39/60 (65%)

Query: 1   VYPGGWTAILVSLDNVGVWNLRVENLDRWYLGHETYMRIINPEENGETEMGPPDNVRYCG 60
           VYP  WTAI ++LDNVG+WN+R EN  R YLG + Y+R+ +P  +   E+  P N   CG
Sbjct: 471 VYPKAWTAIYMALDNVGMWNVRSENWARQYLGQQFYLRVFSPANSWRDELPIPKNALLCG 530


>GSVIVT01005373001 assembled CDS
          Length = 550

 Score = 68.2 bits (165), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%)

Query: 1   VYPGGWTAILVSLDNVGVWNLRVENLDRWYLGHETYMRIINPEENGETEMGPPDNVRYCG 60
           VYPG WTAIL++ DN G+WNLR E  +R YLG + Y+ +++P  +   E   PD    CG
Sbjct: 478 VYPGSWTAILLTFDNAGLWNLRSETWERNYLGQQLYVSVLSPARSLRDEYNIPDVAELCG 537

Query: 61  ALRSLQK 67
            ++ L K
Sbjct: 538 IVKGLPK 544


>GSVIVT01004401001 assembled CDS
          Length = 550

 Score = 68.2 bits (165), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%)

Query: 1   VYPGGWTAILVSLDNVGVWNLRVENLDRWYLGHETYMRIINPEENGETEMGPPDNVRYCG 60
           VYPG WTAIL++ DN G+WNLR E  +R YLG + Y+ +++P  +   E   PD    CG
Sbjct: 478 VYPGSWTAILLTFDNAGLWNLRSETWERNYLGQQLYVSVLSPARSLRDEYNIPDVAELCG 537

Query: 61  ALRSLQK 67
            ++ L K
Sbjct: 538 IVKGLPK 544


>GSVIVT01012708001 assembled CDS
          Length = 123

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 39/60 (65%)

Query: 1   VYPGGWTAILVSLDNVGVWNLRVENLDRWYLGHETYMRIINPEENGETEMGPPDNVRYCG 60
           VYP  WTAI ++LDNVG+WN+R EN  R YLG + Y+R+ +P  +   E+  P N   CG
Sbjct: 54  VYPKAWTAIYMALDNVGMWNVRSENWARQYLGQQFYLRVFSPANSWRDELPIPKNALLCG 113


>GSVIVT01005055001 assembled CDS
          Length = 601

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 38/60 (63%)

Query: 1   VYPGGWTAILVSLDNVGVWNLRVENLDRWYLGHETYMRIINPEENGETEMGPPDNVRYCG 60
           VYP  W+A+L SLDN G+WNLR     R YLG + Y+R+ + E +  TE   PDN  YCG
Sbjct: 537 VYPNSWSAVLASLDNKGMWNLRSAIWSRQYLGQQLYIRVWSNETSLFTEYDVPDNALYCG 596


>GSVIVT01008707001 assembled CDS
          Length = 541

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/60 (50%), Positives = 38/60 (63%)

Query: 1   VYPGGWTAILVSLDNVGVWNLRVENLDRWYLGHETYMRIINPEENGETEMGPPDNVRYCG 60
           VYP  WTAI V+LDNVG+WN+R E   R YLG + Y+R+ +P E+   E   P N   CG
Sbjct: 472 VYPKSWTAIYVALDNVGMWNVRSEFWARQYLGQQFYLRVYSPVESIRDEFPIPKNALLCG 531


>GSVIVT01030441001 assembled CDS
          Length = 541

 Score = 64.7 bits (156), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 1   VYPGGWTAILVSLDNVGVWNLRVENLDRWYLGHETYMRIINPEENGETEMGPPDNVRYCG 60
           VYP  WTA+ + LDNVG+WN+R EN  R YLG + Y+R+ +P  +   E   P N   CG
Sbjct: 472 VYPKSWTALYMPLDNVGMWNVRSENWARQYLGQQFYLRVYSPANSWRDEYPIPKNALLCG 531


>GSVIVT01023902001 assembled CDS
          Length = 542

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 1   VYPGGWTAILVSLDNVGVWNLRVENLDRWYLGHETYMRIINPEENGETEMGPPDNVRYCG 60
           VYP  WTA+ ++LDNVG+WNLR E   R YLG + Y+R+ +P  +   E   P N   CG
Sbjct: 473 VYPKSWTAVYIALDNVGMWNLRTEFWARQYLGQQFYLRVYSPVGSIRDEYPIPKNALLCG 532


>GSVIVT01005054001 assembled CDS
          Length = 535

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 35/60 (58%)

Query: 1   VYPGGWTAILVSLDNVGVWNLRVENLDRWYLGHETYMRIINPEENGETEMGPPDNVRYCG 60
           VYP  WT I VSLDN G+WN+R    +R YLG + Y+R+ NP  +   E   P N   CG
Sbjct: 469 VYPRSWTTIWVSLDNQGMWNMRSAVWERQYLGQQFYLRVFNPVHSPANEYDIPKNALLCG 528