Jatropha Genome Database

JcCB0694151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0694151.10 + phase: 1 /partial
         (124 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032640001 assembled CDS                                       192   2e-50

>GSVIVT01032640001 assembled CDS
          Length = 230

 Score =  192 bits (489), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/125 (81%), Positives = 112/125 (89%), Gaps = 1/125 (0%)

Query: 1   LMVAATLVLLCTRPPEVAIFGQVPWLLTVPSILIIGREITMSAVREWAASQNSKLLEAVA 60
           LMVAATLVLLC+RP EV +FG VPWLLTVPSI IIGREITMSAVREWAASQN++LLEAVA
Sbjct: 106 LMVAATLVLLCSRPLEVGMFGPVPWLLTVPSIAIIGREITMSAVREWAASQNTELLEAVA 165

Query: 61  VNNLGKWKTATQMTALTILLATRDSSLGGPGISVAS-VVLLYISAGLSVWSLAMYMSKIW 119
           VNNLGKWKTATQMT+LT+LLA RDSSL   G  VAS VVLLYISAGL+VWSL +YM KIW
Sbjct: 166 VNNLGKWKTATQMTSLTVLLAARDSSLTAAGGLVASGVVLLYISAGLAVWSLVVYMRKIW 225

Query: 120 RVLLK 124
           +VL+K
Sbjct: 226 KVLIK 230