Jatropha Genome Database

JcCB0693601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0693601.10 + phase: 0 
         (333 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017856001 assembled CDS                                       184   5e-47
GSVIVT01036490001 assembled CDS                                       156   1e-38

>GSVIVT01017856001 assembled CDS
          Length = 335

 Score =  184 bits (467), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 116/263 (44%), Positives = 140/263 (53%), Gaps = 25/263 (9%)

Query: 1   MAVSAIGFEGYEKRLEITFFEPGIFVDPEGKGLRALSKAQLDEFLGPAECTIVDSLKNDH 60
           MAVS  GFEG+EKRLE+ F      V   G GLR L    L++ L   +CT+V ++ N +
Sbjct: 1   MAVS--GFEGFEKRLELHFSGDDPVV---GMGLRHLDFESLEQVLHAVQCTVVSAVGNHY 55

Query: 61  VDSYVLSESSLFIYPYKLIIKTCGXXXXXXXXXXXXXXSNALSLKVKSVRYTRGSFIFPG 120
            D+YVLSESSLF+YP K+IIKTCG                 L L +   RYTRGSFIFP 
Sbjct: 56  FDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIPPLLHHGRHLGLAMCGCRYTRGSFIFPK 115

Query: 121 AQSYPHRSFTEEVAVLDDYFGKLGGGSMAYVMGGSDSDSPQKWHVYSAYADSAISRDLVY 180
           AQ +PH SF +EV  L+           A VM      S   WHV+SA        D  +
Sbjct: 116 AQPFPHTSFRDEVIYLEQSLPSTLCYRKASVM--PSKMSSHSWHVFSA-------SDEPH 166

Query: 181 TVEMCMTGLDRQKAAVFFKTRSASAAVMTVDSGIRKILPDSKICDFDFDPCGYSMNSIEG 240
            V   M                 +   MT  +GI  I P + ICDF FDPCGYSMN I+G
Sbjct: 167 MVLQHMP-----------DAGDVAGKEMTELTGIGDINPGALICDFAFDPCGYSMNGIDG 215

Query: 241 SAISTIHITPEDGFSYASFETVG 263
              STIH+TPEDG+SYASFE VG
Sbjct: 216 DRYSTIHVTPEDGYSYASFECVG 238


>GSVIVT01036490001 assembled CDS
          Length = 136

 Score =  156 bits (395), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/143 (55%), Positives = 96/143 (67%), Gaps = 33/143 (23%)

Query: 152 MGGSDSDSPQKWHVYSAYADSAISRDLVYTVEMCMTGLDRQKAAVFFKTRSASAAVMTVD 211
           M GS  D PQKWHVY+A ADSA                                AVMT +
Sbjct: 1   MMGS-HDKPQKWHVYTAAADSA--------------------------------AVMTEN 27

Query: 212 SGIRKILPDSKICDFDFDPCGYSMNSIEGSAISTIHITPEDGFSYASFETVGYHPEEVNL 271
           SGIRKILP+S+ICDF+FDPCGYSMN+IE  AISTIH+TPEDGFSYASFE +GY+  + +L
Sbjct: 28  SGIRKILPNSEICDFEFDPCGYSMNAIEEDAISTIHVTPEDGFSYASFEAMGYNLNDDSL 87

Query: 272 NQLVDRVLSCFQPSQFSIAVHAD 294
            Q+++RVL CFQP+ FS+A+HAD
Sbjct: 88  TQMLERVLDCFQPAHFSVALHAD 110