Jatropha Genome Database

JcCB0693201.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0693201.20 - phase: 1 /pseudo/partial
         (89 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019150001 assembled CDS                                        70   3e-13

>GSVIVT01019150001 assembled CDS
          Length = 86

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 49/69 (71%), Gaps = 5/69 (7%)

Query: 17 FNLLNFSVLFGLAIYLCSNADFHVLXRTLKAGKLNEKVLKLFMATGKDEVLSVIEALNIQ 76
           NL NFS L  L  ++       +  RTLKAGKL EK+L LFMATGKDEVL++I++LNIQ
Sbjct: 17 LNLSNFSDLSPLPDHIL----LDLFLRTLKAGKLTEKILMLFMATGKDEVLALIQSLNIQ 72

Query: 77 YVLTPVLPT 85
           + TPVLPT
Sbjct: 73 LI-TPVLPT 80