Jatropha Genome Database

JcCB0693201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0693201.10 - phase: 0 /partial
         (127 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019151001 assembled CDS                                       121   7e-29
GSVIVT01008552001 assembled CDS                                       103   2e-23
GSVIVT01008133001 assembled CDS                                        72   7e-14
GSVIVT01036557001 assembled CDS                                        50   2e-07
GSVIVT01012244001 assembled CDS                                        49   7e-07

>GSVIVT01019151001 assembled CDS
          Length = 159

 Score =  121 bits (304), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 57/71 (80%), Positives = 65/71 (91%)

Query: 1  MSVTNIKDNDVDIIIGALNSDLTSFFNEWRPIFSRFDLIIVKDPDLNEELKIPEGFNLNV 60
          MS TNI D++VDI+IGAL++DLTSF NEWRP+FSRF LIIVKDPDL EELKIPEGFNL+V
Sbjct: 1  MSQTNIGDDEVDIVIGALHADLTSFLNEWRPLFSRFHLIIVKDPDLREELKIPEGFNLHV 60

Query: 61 YTKSHIDQVVG 71
          YTKS ID+VVG
Sbjct: 61 YTKSDIDRVVG 71


>GSVIVT01008552001 assembled CDS
          Length = 340

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 69/100 (69%), Gaps = 1/100 (1%)

Query: 29  WRPIFSRFDLIIVKDPDLNEELKIPEGFNLNVYTKSHIDQVVGPSNS-ILFSGYSCRYFG 87
           WRP F  + LIIV+D D  + +++PEGF+  +Y ++ +++++GP  S I F   +CR FG
Sbjct: 2   WRPFFQPYHLIIVQDGDPTKTIRVPEGFDYELYNRNDVNRILGPKASCISFKDSACRCFG 61

Query: 88  FLMSRKKYIISVDDDCFPAKDEKDFLVNAVDQHIMNLTAP 127
           FL+S+KKYI ++DDDCF AKD     +NA+ QHI NL  P
Sbjct: 62  FLVSKKKYIFTIDDDCFVAKDPSGKEINALAQHIQNLLTP 101


>GSVIVT01008133001 assembled CDS
          Length = 301

 Score = 72.0 bits (175), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 54/99 (54%), Gaps = 28/99 (28%)

Query: 29  WRPIFSRFDLIIVKDPDLNEELKIPEGFNLNVYTKSHIDQVVGPSNSILFSGYSCRYFGF 88
           WRP F ++ LIIV+D D                          PS +I  S  +CR FG+
Sbjct: 2   WRPFFQQYHLIIVQDGD--------------------------PSKTIRDS--ACRCFGY 33

Query: 89  LMSRKKYIISVDDDCFPAKDEKDFLVNAVDQHIMNLTAP 127
           L+S+KKYI ++DDDCF AKD     +NA++QHI NL AP
Sbjct: 34  LVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLAP 72


>GSVIVT01036557001 assembled CDS
          Length = 267

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 30/39 (76%)

Query: 89  LMSRKKYIISVDDDCFPAKDEKDFLVNAVDQHIMNLTAP 127
           ++S+KKYI ++DDDCF AKD     +NA++QHI NL +P
Sbjct: 1   MVSKKKYIFTIDDDCFVAKDPSGKQINALEQHIKNLLSP 39


>GSVIVT01012244001 assembled CDS
          Length = 269

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 89  LMSRKKYIISVDDDCFPAKDEKDFLVNAVDQHIMNLTAP 127
           ++S+KKYI ++DDDCF AKD     +NA++QHI NL  P
Sbjct: 1   MVSKKKYIFTIDDDCFVAKDPSGKDINALEQHIKNLLTP 39