Jatropha Genome Database

JcCB0693041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0693041.10 + phase: 0 /pseudo/partial
         (271 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020689001 assembled CDS                                       325   1e-89
GSVIVT01021204001 assembled CDS                                       315   2e-86
GSVIVT01028770001 assembled CDS                                        65   2e-11

>GSVIVT01020689001 assembled CDS
          Length = 524

 Score =  325 bits (833), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/185 (86%), Positives = 168/185 (90%)

Query: 87  VRGGRDLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDITVKIGLRKGSRS 146
           VRGGRDLF LLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSL EAKS+I VKIGLRKGS+S
Sbjct: 35  VRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSNIVVKIGLRKGSKS 94

Query: 147 FAEARAAGFTEENGTSGDIWETISGSDLVMLLISDAAQADNYEKIFSYMKPNSIXXXXXX 206
           FAEARAAGFTEENGT GDI+ETISGSDLVMLLISD+AQADNYEKIFS+MKPNSI      
Sbjct: 95  FAEARAAGFTEENGTLGDIYETISGSDLVMLLISDSAQADNYEKIFSHMKPNSILGLSHG 154

Query: 207 XXXXXXQSMGIDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 266
                 QS+G+DFPKNISVIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAV QDVDGRA
Sbjct: 155 FLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVQQDVDGRA 214

Query: 267 TDVAL 271
           TDVAL
Sbjct: 215 TDVAL 219


>GSVIVT01021204001 assembled CDS
          Length = 349

 Score =  315 bits (807), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 154/185 (83%), Positives = 166/185 (89%)

Query: 87  VRGGRDLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDITVKIGLRKGSRS 146
           VRGGRDLF LLPDAFKGIKQIGVIG GSQGPAQ QNLRDSLAEAKSDI VKIGLRKGSRS
Sbjct: 35  VRGGRDLFHLLPDAFKGIKQIGVIGRGSQGPAQVQNLRDSLAEAKSDIVVKIGLRKGSRS 94

Query: 147 FAEARAAGFTEENGTSGDIWETISGSDLVMLLISDAAQADNYEKIFSYMKPNSIXXXXXX 206
            AEARAAGFTEENGT GDIWETI+GS+LV+LLISD+AQADNYEK+FS+MKPNS+      
Sbjct: 95  LAEARAAGFTEENGTLGDIWETIAGSNLVLLLISDSAQADNYEKVFSHMKPNSMLGLSHD 154

Query: 207 XXXXXXQSMGIDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 266
                 QS+G+DFP+NISVI VCPKGMGPSVRRLYVQGKE+NGAGI+SSFAVHQDVDGRA
Sbjct: 155 FLLGHLQSLGLDFPENISVITVCPKGMGPSVRRLYVQGKEVNGAGIDSSFAVHQDVDGRA 214

Query: 267 TDVAL 271
           TDVAL
Sbjct: 215 TDVAL 219


>GSVIVT01028770001 assembled CDS
          Length = 171

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/39 (76%), Positives = 32/39 (82%)

Query: 87  VRGGRDLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRD 125
           V+ GRD F LL DA KGIKQIGV+ WGSQGP QAQNLRD
Sbjct: 107 VKRGRDPFHLLLDASKGIKQIGVVSWGSQGPVQAQNLRD 145