Jatropha Genome Database

JcCB0689281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0689281.10 - phase: 0 /partial
         (267 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011378001 assembled CDS                                        82   3e-16
GSVIVT01024682001 assembled CDS                                        71   7e-13
GSVIVT01033595001 assembled CDS                                        70   1e-12
GSVIVT01019669001 assembled CDS                                        64   5e-11
GSVIVT01022568001 assembled CDS                                        61   5e-10
GSVIVT01034614001 assembled CDS                                        61   6e-10

>GSVIVT01011378001 assembled CDS
          Length = 305

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 113/266 (42%), Gaps = 95/266 (35%)

Query: 1   MPRALSLQTPLVHHPPSRKGDSHHXXXXXXXXXXXXXXIEPITHPKFPDQTQSPQKSTIN 60
           +PR+ S+    VHHPP  KGDS+H                        D +   + S +N
Sbjct: 21  VPRSYSMH---VHHPPQSKGDSYHVVALTSTTLGTLKL----------DTSHQNRNSHVN 67

Query: 61  SNKTLIPADPGESLSPDSVINTWELMDGLDELDFEMGXXXXXXXXXXXDDYVLISPKSNS 120
              T++  +  +   P++ IN WELM+GL+                  D   L SP    
Sbjct: 68  G--TIVEEEEDKENKPET-INAWELMEGLE------------------DASPLRSP---- 102

Query: 121 FHHLGFDESVKKLNDSFDFVKSEEIEVDKSFSLSKPLWKHLSEESFLSNMDPNVVSSYRR 180
            +HL           SF F      ++D+     +P+W +L +    S M+PN  S    
Sbjct: 103 -NHL----------RSFSF------DIDR-----RPMWLNLVD----SEMNPNSNS---- 132

Query: 181 ALSSRQLGYTKESKSIKSVGSSPINSSFKNGFIFQDNKIVLYYTSLRGIRKTYEDCCAVR 240
                           K+   S           F  + +V+Y+TSLRG+RKTYEDCC VR
Sbjct: 133 ----------------KTASQS-----------FAKDTVVVYFTSLRGVRKTYEDCCHVR 165

Query: 241 MIFRGFRVPVDERDISMDSSYRKELQ 266
           +I +   + +DERD+SM S +++EL+
Sbjct: 166 VILKSLGIRLDERDVSMHSGFKEELK 191


>GSVIVT01024682001 assembled CDS
          Length = 246

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 42/52 (80%)

Query: 216 DNKIVLYYTSLRGIRKTYEDCCAVRMIFRGFRVPVDERDISMDSSYRKELQS 267
           +++IV+Y+TSLR +R T+EDC  VR I RGFRV +DERD++MDS + +ELQ 
Sbjct: 94  ESRIVVYFTSLRVVRSTFEDCRVVRSILRGFRVSMDERDLAMDSGFLEELQG 145


>GSVIVT01033595001 assembled CDS
          Length = 330

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/36 (88%), Positives = 33/36 (91%)

Query: 154 SKPLWKHLSEESFLSNMDPNVVSSYRRALSSRQLGY 189
           SKPLWKHLSEES L+ MD NVVSSYRRALSSRQLGY
Sbjct: 29  SKPLWKHLSEESLLAKMDSNVVSSYRRALSSRQLGY 64


>GSVIVT01019669001 assembled CDS
          Length = 284

 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 39/51 (76%)

Query: 216 DNKIVLYYTSLRGIRKTYEDCCAVRMIFRGFRVPVDERDISMDSSYRKELQ 266
           +N++V+Y T+LRG+RKT+EDC AVR    G  V + ERDISMD  +++EL+
Sbjct: 102 ENRVVVYTTTLRGVRKTFEDCNAVRAAIEGLGVSLCERDISMDRGFKEELR 152


>GSVIVT01022568001 assembled CDS
          Length = 183

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 34/47 (72%)

Query: 219 IVLYYTSLRGIRKTYEDCCAVRMIFRGFRVPVDERDISMDSSYRKEL 265
           ++ Y TSLRGIRKT+EDC A+R +   FRV   ERD+SM   +R+EL
Sbjct: 34  VIFYTTSLRGIRKTFEDCSAIRFLLESFRVLFQERDVSMHMEFREEL 80


>GSVIVT01034614001 assembled CDS
          Length = 399

 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 36/49 (73%)

Query: 217 NKIVLYYTSLRGIRKTYEDCCAVRMIFRGFRVPVDERDISMDSSYRKEL 265
           + +VLY TSLRGIRKT+EDC ++R +   FRV   ERD+SM   +R+EL
Sbjct: 252 DAVVLYTTSLRGIRKTFEDCTSIRFLLESFRVIFYERDVSMHLEFREEL 300