Jatropha Genome Database

JcCB0687271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0687271.10 - phase: 1 /partial
         (227 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000712001 assembled CDS                                       177   3e-45
GSVIVT01000713001 assembled CDS                                       127   3e-30

>GSVIVT01000712001 assembled CDS
          Length = 416

 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 78/89 (87%), Positives = 84/89 (94%)

Query: 118 LQTSGAYSAREENLKREEEAGRLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIV 177
           +QTSG Y AREE+LKREEEAGRLKFVCL NDG+D+HM+WLIGLKN+FARQLPNMPKEYIV
Sbjct: 1   MQTSGTYCAREESLKREEEAGRLKFVCLGNDGVDQHMIWLIGLKNVFARQLPNMPKEYIV 60

Query: 178 RLVMDRSHKSVMVIRHNHVVGGITYRPYV 206
           RLVMDRSHKSVMVIR N VVGGITYRPYV
Sbjct: 61  RLVMDRSHKSVMVIRRNQVVGGITYRPYV 89


>GSVIVT01000713001 assembled CDS
          Length = 438

 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 67/73 (91%)

Query: 134 EEEAGRLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRH 193
           +EEAGRLKFV + NDG+DEHM+WLI LKN+F+RQLP++P+EYIVRLV+D +HKS+M+IR 
Sbjct: 79  QEEAGRLKFVFIENDGVDEHMIWLIELKNLFSRQLPDVPREYIVRLVLDINHKSIMIIRR 138

Query: 194 NHVVGGITYRPYV 206
           N VVGGITYRPY+
Sbjct: 139 NQVVGGITYRPYL 151