Jatropha Genome Database

JcCB0684951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0684951.10 - phase: 0 /partial
         (139 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008621001 assembled CDS                                       239   3e-64
GSVIVT01033008001 assembled CDS                                       226   4e-60

>GSVIVT01008621001 assembled CDS
          Length = 513

 Score =  239 bits (610), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 122/137 (89%)

Query: 1   ELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSNRGAQKLARIRENSNFFRSE 60
           ELIQYLKYTCPAHLYATSISPPAA+QIIS+IKVILGEDGS+RGAQKLARIRENSNFFRSE
Sbjct: 349 ELIQYLKYTCPAHLYATSISPPAAQQIISSIKVILGEDGSSRGAQKLARIRENSNFFRSE 408

Query: 61  LIKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICI 120
           L KMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECL+QN            LLLARARICI
Sbjct: 409 LQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVTVAFPATPLLLARARICI 468

Query: 121 SASHTKEDLIKALEVNS 137
           SASHT+EDLIK LEV S
Sbjct: 469 SASHTREDLIKGLEVIS 485


>GSVIVT01033008001 assembled CDS
          Length = 489

 Score =  226 bits (575), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 112/139 (80%), Positives = 118/139 (84%)

Query: 1   ELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSNRGAQKLARIRENSNFFRSE 60
           ELIQYLK+T PAHLYATS+SPPA +QIISAIKVILGEDGS RGAQKLA+IRENSNFFRSE
Sbjct: 325 ELIQYLKHTSPAHLYATSMSPPAVQQIISAIKVILGEDGSCRGAQKLAQIRENSNFFRSE 384

Query: 61  LIKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICI 120
           L  MGFEVLGDNDSPVMPIMLYNP KIPAFSRECL+QN            LLLARARICI
Sbjct: 385 LQSMGFEVLGDNDSPVMPIMLYNPGKIPAFSRECLKQNVAVVMSAFPATPLLLARARICI 444

Query: 121 SASHTKEDLIKALEVNSVI 139
           SASHTKEDLIK LEV S +
Sbjct: 445 SASHTKEDLIKGLEVISRV 463