Jatropha Genome Database

JcCB0682701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0682701.10 - phase: 0 /partial
         (98 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010913001 assembled CDS                                       145   4e-36
GSVIVT01015240001 assembled CDS                                        69   5e-13

>GSVIVT01010913001 assembled CDS
          Length = 148

 Score =  145 bits (366), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 66/75 (88%), Positives = 69/75 (92%)

Query: 24 VPIHALNIGVQRADASVSVSKECSRKCESEFCSVPPFLRYGKYCGLLYSGCPGERPCDGL 83
           P  ALNIGVQ  D SV++SKECSRKCESEFCSVPPFLRYGKYCGLLYSGCPGE+PCDGL
Sbjct: 16 TPTLALNIGVQATDGSVTLSKECSRKCESEFCSVPPFLRYGKYCGLLYSGCPGEKPCDGL 75

Query: 84 DACCMKHDACVQAKN 98
          DACCMKHDACVQAKN
Sbjct: 76 DACCMKHDACVQAKN 90


>GSVIVT01015240001 assembled CDS
          Length = 151

 Score = 68.6 bits (166), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 44/61 (72%), Gaps = 1/61 (1%)

Query: 37 DASVSVSKECSRKCESEFCSVPPFLRYGKYCGLLYSGCPGERPCDGLDACCMKHDACVQA 96
          D+S +   +CS+ C +E C+    +RYGK+CG+ ++GCPGE+PCD LDACC  HD CV+ 
Sbjct: 33 DSSNNSQIKCSKACVAENCN-SVGIRYGKFCGVGWTGCPGEKPCDDLDACCKIHDECVEK 91

Query: 97 K 97
          K
Sbjct: 92 K 92