Jatropha Genome Database

JcCB0682391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0682391.10 - phase: 2 /partial
         (359 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026444001 assembled CDS                                       484   e-137
GSVIVT01023852001 assembled CDS                                       457   e-129
GSVIVT01013435001 assembled CDS                                       391   e-109

>GSVIVT01026444001 assembled CDS
          Length = 551

 Score =  484 bits (1246), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 241/344 (70%), Positives = 275/344 (79%), Gaps = 33/344 (9%)

Query: 1   IFFTLFFSVAYYLLHRWRDKIRNSTPLHIVTLSEIAAIVSLIASFIYLLGFFGIDFVQSF 60
           IFF LFFSVAY+LLHRWR+KIR STPLH++TLSEIAAIVS++AS IYLLGFFG+DFVQS 
Sbjct: 44  IFFALFFSVAYFLLHRWREKIRTSTPLHVLTLSEIAAIVSMLASVIYLLGFFGVDFVQSL 103

Query: 61  IARASHDAWDLDDTDPAYLINEDHRLVTCXXXXXXXXXXXXXKLPPPDLI-VAPL---AS 116
                                ED R   C               PPP +  VAP+   +S
Sbjct: 104 ---------------------EDSRPGPCAAAIDC--------CPPPKVADVAPVTVFSS 134

Query: 117 EDDENIVKSVVNGTIPSYSLESKLGDCKRAATIRREALQRTTGRSLDGLPVDGFDYESIL 176
           E++E +++SVV G++PSY LESKLGDCKRAA IRREALQRTTGRSL GLP+DGFDYE+IL
Sbjct: 135 EEEEEMIRSVVAGSVPSYLLESKLGDCKRAAAIRREALQRTTGRSLAGLPLDGFDYEAIL 194

Query: 177 GQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASTNRGCKAIYLSGGATSVL 236
           GQCCEMPVGYVQIPVGIAGPLLLDGREY VPMATTEGCLVASTNRGCKAI+  GGA+S++
Sbjct: 195 GQCCEMPVGYVQIPVGIAGPLLLDGREYWVPMATTEGCLVASTNRGCKAIFTCGGASSMV 254

Query: 237 LKDCMTRAPVVRFESVTRAADLKFFLENPENFDTLAVVFNRSSRFARLQGVKCAIAGKNV 296
           L+D MTRAPVVRF + +RAADLK F+E+P NFDTLAVVFNRSSRFARLQG+ CAIAGKN+
Sbjct: 255 LRDRMTRAPVVRFPTASRAADLKLFVEDPINFDTLAVVFNRSSRFARLQGIHCAIAGKNL 314

Query: 297 YVRFSCSTGDAMGMNMVSKGVQNVLEFLKNDFPDMRLAGISGKF 340
           Y+RF CSTGDAMGMNMVSKGVQNVL+FL+ DFPDM + GISG F
Sbjct: 315 YMRFGCSTGDAMGMNMVSKGVQNVLDFLQTDFPDMDVIGISGNF 358


>GSVIVT01023852001 assembled CDS
          Length = 553

 Score =  457 bits (1176), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/329 (70%), Positives = 265/329 (80%), Gaps = 26/329 (7%)

Query: 13  LLHRWRDKIRNSTPLHIVTLSEIAAIVSLIASFIYLLGFFGIDFVQSFIARASHD-AWDL 71
           LL RWR+KIR STPLH+VTLSEIAAIV+ + S I+LLGFFGIDFVQ FIAR  HD  WD 
Sbjct: 59  LLTRWREKIRTSTPLHVVTLSEIAAIVTFMGSCIFLLGFFGIDFVQGFIARPGHDNEWDA 118

Query: 72  DDTDPAYLINEDHRLVTCXXXXXXXXXXXXXKLPPPDLIVAPLASEDDENIVKSVVNGTI 131
           +D     ++ ED R V                       V+P +SE+DE I+KSVV G I
Sbjct: 119 EDD---IIVKEDARAVP----------------------VSPPSSEEDEEIIKSVVAGAI 153

Query: 132 PSYSLESKLGDCKRAATIRREALQRTTGRSLDGLPVDGFDYESILGQCCEMPVGYVQIPV 191
           PSYSLES+LGDC+RAA IRREALQR TG SL+GLP++G DYESILGQCCEMPVGY+QIPV
Sbjct: 154 PSYSLESRLGDCRRAAAIRREALQRMTGTSLEGLPLEGLDYESILGQCCEMPVGYIQIPV 213

Query: 192 GIAGPLLLDGREYSVPMATTEGCLVASTNRGCKAIYLSGGATSVLLKDCMTRAPVVRFES 251
           GIAGPLLLDGREYS+PMATTEGCLVASTNRGCKAIY SGGATSVLL+D MTRAPVVRF +
Sbjct: 214 GIAGPLLLDGREYSIPMATTEGCLVASTNRGCKAIYASGGATSVLLRDAMTRAPVVRFGT 273

Query: 252 VTRAADLKFFLENPENFDTLAVVFNRSSRFARLQGVKCAIAGKNVYVRFSCSTGDAMGMN 311
             RAA+L  FLENP NF+TLA+VFNRSSRF +LQ +KCAIAGKN+Y+RFS STGDAMGMN
Sbjct: 274 AKRAAELMLFLENPLNFETLALVFNRSSRFGKLQSIKCAIAGKNLYIRFSSSTGDAMGMN 333

Query: 312 MVSKGVQNVLEFLKNDFPDMRLAGISGKF 340
           M+SKGVQNVL+FL+NDFPDM + GISG +
Sbjct: 334 MISKGVQNVLDFLQNDFPDMDVIGISGNY 362


>GSVIVT01013435001 assembled CDS
          Length = 541

 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/235 (79%), Positives = 211/235 (89%)

Query: 106 PPDLIVAPLASEDDENIVKSVVNGTIPSYSLESKLGDCKRAATIRREALQRTTGRSLDGL 165
           PP  +        DE+IVK VV+GTIPSYSLESKLGDCKRAA+IRREALQR TG+SL  L
Sbjct: 114 PPRAVPCLHRMSQDEDIVKLVVSGTIPSYSLESKLGDCKRAASIRREALQRLTGKSLLEL 173

Query: 166 PVDGFDYESILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASTNRGCKA 225
           P +GFDY++ILGQCCEMPVGYVQIPVGIAGPLLLDG EYSVPMATTEGCLVASTNRGCKA
Sbjct: 174 PFEGFDYQAILGQCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKA 233

Query: 226 IYLSGGATSVLLKDCMTRAPVVRFESVTRAADLKFFLENPENFDTLAVVFNRSSRFARLQ 285
           IY+SGGATS++L+D MTRAPVVRF +  RAA+LKFFLENPENF+TL+V+FNRSSRFARLQ
Sbjct: 234 IYVSGGATSMVLRDGMTRAPVVRFATAKRAAELKFFLENPENFETLSVIFNRSSRFARLQ 293

Query: 286 GVKCAIAGKNVYVRFSCSTGDAMGMNMVSKGVQNVLEFLKNDFPDMRLAGISGKF 340
            ++CA+AGKN+Y+RFSCSTGDAMGMNMVSKGVQNVL+FL+NDFPDM + GISG F
Sbjct: 294 SIQCAMAGKNLYIRFSCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNF 348