Jatropha Genome Database

JcCB0678661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0678661.10 - phase: 0 /pseudo/partial
         (335 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031809001 assembled CDS                                       218   3e-57

>GSVIVT01031809001 assembled CDS
          Length = 2686

 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/322 (43%), Positives = 205/322 (63%), Gaps = 45/322 (13%)

Query: 1    NAENGLLQHGLCESNTIIADLRENNSKSSKDLQMCRNLKGKLLADIKNSFDRILRKEEET 60
            NAENGLL HGLCESN++IA LRE+N K+ ++L+MCR LKGKLLADIKNSFDRI RKEEET
Sbjct: 1622 NAENGLLHHGLCESNSVIAGLREHNFKTRQELEMCRILKGKLLADIKNSFDRISRKEEET 1681

Query: 61   GDLSTKLTTFEKKIFDLQLQEESMLQRSNYMGSQLSILMQDLDFSNRNIAQSLIDQEKIL 120
            G+L  KLT FEKKI DLQLQEESML RSNYMGS+L++LM++LD SN NI  SL+DQ+K+L
Sbjct: 1682 GELRIKLTAFEKKILDLQLQEESMLHRSNYMGSELAVLMKELDLSNSNILASLLDQQKLL 1741

Query: 121  TEKEVLLNSQAELFLTDFCSKDIESLVLASQLEEMSLQKDEAEKENRSYASVLETLKEEM 180
             +K+ ++ SQAE F+ D  SKDI+ L+ A     + +Q+ EAE     Y  V E LK   
Sbjct: 1742 QDKDEVIKSQAESFMIDLYSKDIDELMEAKMRLMIQVQELEAE-----YRKVQEDLK--- 1793

Query: 181  VLLMVDGELKEQVLLAKDTEVQDLLSWLNQGHLRITEMNEVNRSLEGEIQLLKDAAC--- 237
                    +KE  L    ++              I+ +++ N+ L+ +I LL+ ++C   
Sbjct: 1794 --------IKETALECSSSQ--------------ISVLDQQNQKLQNDISLLETSSCNLQ 1831

Query: 238  -SNDVLKGELDEV--MESKARLL-IQIQELEADREKLLNDLKTKEIALDGSSSHISILDQ 293
             + D+   E+ ++  +E + +LL  ++ +L+ +   +L DL+ ++       S    +D 
Sbjct: 1832 EALDIKDAEISKMNLLEEENKLLKTEVMKLKTECCNVLQDLEERK-------SEFESIDM 1884

Query: 294  QNQKLQKDICLLET-LSSVHTN 314
            +N +LQ  +C LET ++S+ T+
Sbjct: 1885 ENHRLQDRVCSLETSIASLQTD 1906