Jatropha Genome Database

JcCB0669741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0669741.10 - phase: 0 /partial
         (92 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009171001 assembled CDS                                       127   8e-31
GSVIVT01005934001 assembled CDS                                       109   2e-25
GSVIVT01015641001 assembled CDS                                        70   2e-13
GSVIVT01011300001 assembled CDS                                        67   1e-12
GSVIVT01001701001 assembled CDS                                        65   8e-12
GSVIVT01015649001 assembled CDS                                        55   5e-09

>GSVIVT01009171001 assembled CDS
          Length = 226

 Score =  127 bits (320), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 59/80 (73%), Positives = 74/80 (92%)

Query: 1   MKDIIARYNLHSNNIDKLGRPSLELQLENSNHARLSKEVAEKTHQLRQMRGEDLRGLNVE 60
           MKDI+ RY +HSNN++KL  PSLELQLENSNH RLSKE+A+K+HQLRQMRGED++GLN+E
Sbjct: 62  MKDILGRYTMHSNNLEKLEGPSLELQLENSNHVRLSKEIADKSHQLRQMRGEDIQGLNIE 121

Query: 61  ELQQLEKMLESGLTRVLETK 80
           EL +LEKMLE+GL+RVL++K
Sbjct: 122 ELLKLEKMLEAGLSRVLKSK 141


>GSVIVT01005934001 assembled CDS
          Length = 227

 Score =  109 bits (273), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 74/81 (91%), Gaps = 1/81 (1%)

Query: 1   MKDIIARYNLHSNNIDKLGRPSLELQL-ENSNHARLSKEVAEKTHQLRQMRGEDLRGLNV 59
           MK+I+ +++L S N++KL +PSLELQL EN+NH+RLSKEVA+K+H+LRQMRGE+L+GLN+
Sbjct: 62  MKEILEKHSLQSKNLEKLEQPSLELQLVENNNHSRLSKEVADKSHKLRQMRGEELQGLNI 121

Query: 60  EELQQLEKMLESGLTRVLETK 80
           E+LQQLEK LE+GL+RV++ K
Sbjct: 122 EDLQQLEKSLEAGLSRVIQKK 142


>GSVIVT01015641001 assembled CDS
          Length = 217

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 60/81 (74%)

Query: 1   MKDIIARYNLHSNNIDKLGRPSLELQLENSNHARLSKEVAEKTHQLRQMRGEDLRGLNVE 60
           +  +I R+N H    +K   PSLELQLENS  A LSKE+A++T +LRQM+GE+L+GL +E
Sbjct: 62  VSQVIERHNQHPQTPEKPEPPSLELQLENSTCAALSKEIAQQTQRLRQMKGEELQGLKIE 121

Query: 61  ELQQLEKMLESGLTRVLETKV 81
           EL +LE++LE+GL  V+E K 
Sbjct: 122 ELIELEELLEAGLCSVVEEKA 142


>GSVIVT01011300001 assembled CDS
          Length = 180

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 57/77 (74%)

Query: 4   IIARYNLHSNNIDKLGRPSLELQLENSNHARLSKEVAEKTHQLRQMRGEDLRGLNVEELQ 63
           +I R+N H     K   PSLELQLENS  A LSKE+A++T +LRQM+GE+L+ L +EEL 
Sbjct: 65  VIGRHNQHPQTPGKPEPPSLELQLENSTCAALSKEIAQQTQRLRQMKGEELQVLKIEELT 124

Query: 64  QLEKMLESGLTRVLETK 80
           +LE++LE+GL  V+E K
Sbjct: 125 ELEELLEAGLCNVVEEK 141


>GSVIVT01001701001 assembled CDS
          Length = 218

 Score = 64.7 bits (156), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)

Query: 4   IIARYNLHSNNIDKLGRPSLELQLENSNHARLSKEVAEKTHQLRQMRGEDLRGLNVEELQ 63
           +I R++ H    +K   PSLELQLEN   A LSKE+A++T +LRQMRGE+L+GL +EEL 
Sbjct: 65  VIERHSQHPQTPEKPEPPSLELQLENRTCAALSKEIAQQTQRLRQMRGEELQGLKIEELI 124

Query: 64  QLEKMLESGLTRVLETKV 81
           +LEK+LE+GL  V+E K 
Sbjct: 125 ELEKLLEAGLCSVVEEKA 142


>GSVIVT01015649001 assembled CDS
          Length = 61

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 42/62 (67%), Gaps = 6/62 (9%)

Query: 25 LQLENSNHARLSKEVAEKTHQLRQMRGEDLRGLNVEELQQLEKMLESGLTRVLETKVYLH 84
          L LENS  A LS+E+A++T +LR+MRGE+L+GL +EEL      LE+G   ++E KV   
Sbjct: 6  LFLENSTFAVLSEEIAQQTQRLRKMRGEELQGLKIEEL------LEAGPCSIVEEKVCFI 59

Query: 85 AL 86
           L
Sbjct: 60 KL 61