Jatropha Genome Database

JcCB0652791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0652791.10 - phase: 1 /partial
         (296 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003603001 assembled CDS                                       326   8e-90
GSVIVT01008311001 assembled CDS                                       277   4e-75
GSVIVT01003606001 assembled CDS                                       230   5e-61
GSVIVT01037384001 assembled CDS                                       100   2e-21

>GSVIVT01003603001 assembled CDS
          Length = 1088

 Score =  326 bits (835), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 169/251 (67%), Positives = 180/251 (71%), Gaps = 57/251 (22%)

Query: 46  EDQGVITVKGVKISARPLYLDMQATSPVDPRVLDAMLPYYLARFGNPHSRTHLYGWESDS 105
           ED   I++KGVKIS RPLYLDMQATSPVDPRV                            
Sbjct: 39  EDADGISMKGVKISGRPLYLDMQATSPVDPRV---------------------------- 70

Query: 106 AVETARSQVAELIGASPKEIVFTSGATESNNISIKGVMKFYKEKKRHVVTTQTEHKCVLD 165
                    A LI ASPKEIVFTSGATESNNIS+KGVM FYKEKKRH             
Sbjct: 71  ---------AALINASPKEIVFTSGATESNNISVKGVMHFYKEKKRH------------- 108

Query: 166 SCRHLQQEGFEVTYLPVRNDGIVDLEKLRSAIRPDTGLVSVMAVNNEIGVIQPMEEIGKI 225
                  EGFEVTYLPV +DGIVD++ +RSAIRPDTGLVSVM VNNEIGVIQP+EEIG I
Sbjct: 109 -------EGFEVTYLPVGSDGIVDIDLMRSAIRPDTGLVSVMTVNNEIGVIQPIEEIGNI 161

Query: 226 CKEFNVPFHTDAAQALGKIPIDVEKWNVSLMSLSGHKIYGPKGIGALYMRRRPRIRVEPQ 285
           C+E  VPFHTDAAQALGKIP+DVEK NVSLMSLSGHKIYGPKG+GALYMRRRPRIRVEPQ
Sbjct: 162 CRELGVPFHTDAAQALGKIPVDVEKMNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPQ 221

Query: 286 MNGGGQERGIR 296
           MNGGGQERGIR
Sbjct: 222 MNGGGQERGIR 232


>GSVIVT01008311001 assembled CDS
          Length = 322

 Score =  277 bits (709), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 149/251 (59%), Positives = 160/251 (63%), Gaps = 80/251 (31%)

Query: 46  EDQGVITVKGVKISARPLYLDMQATSPVDPRVLDAMLPYYLARFGNPHSRTHLYGWESDS 105
           ED   I++KGVKIS RPLYLD+QATSPVDPRVLDAMLPYYL+ FGNPHSRTHLYGWES+ 
Sbjct: 36  EDADGISMKGVKISGRPLYLDVQATSPVDPRVLDAMLPYYLSSFGNPHSRTHLYGWESEL 95

Query: 106 AVETARSQVAELIGASPKEIVFTSGATESNNISIKGVMKFYKEKKRHVVTTQTEHKCVLD 165
           AVE AR+QVA LI ASPKEIVFTSGATESNNIS+KGVM FYK+KKRHV+TTQTEHK    
Sbjct: 96  AVEKARAQVAALINASPKEIVFTSGATESNNISVKGVMHFYKDKKRHVITTQTEHK---- 151

Query: 166 SCRHLQQEGFEVTYLPVRNDGIVDLEKLRSAIRPDTGLVSVMAVNNEIGVIQPMEEIGKI 225
                                            PDTGLVSVMAVNNEIGVIQP+EEIGK+
Sbjct: 152 ---------------------------------PDTGLVSVMAVNNEIGVIQPIEEIGKM 178

Query: 226 CKEFNVPFHTDAAQALGKIPIDVEKWNVSLMSLSGHKIYGPKGIGALYMRRRPRIRVEPQ 285
                                                       GALYMRRRPRIRVEPQ
Sbjct: 179 -------------------------------------------FGALYMRRRPRIRVEPQ 195

Query: 286 MNGGGQERGIR 296
           MNGGGQERGIR
Sbjct: 196 MNGGGQERGIR 206


>GSVIVT01003606001 assembled CDS
          Length = 255

 Score =  230 bits (587), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 125/216 (57%), Positives = 130/216 (60%), Gaps = 77/216 (35%)

Query: 81  MLPYYLARFGNPHSRTHLYGWESDSAVETARSQVAELIGASPKEIVFTSGATESNNISIK 140
           MLPYYL+ FGNPHSRTHLYGWESD AVE AR+QVA LI ASPKEIVFTSGATESNNIS+K
Sbjct: 1   MLPYYLSSFGNPHSRTHLYGWESDLAVEKARAQVAALINASPKEIVFTSGATESNNISVK 60

Query: 141 GVMKFYKEKKRHVVTTQTEHKCVLDSCRHLQQEGFEVTYLPVRNDGIVDLEKLRSAIRPD 200
           GVM FYKEKKRHV+TTQTEHKCVLDSCR                                
Sbjct: 61  GVMHFYKEKKRHVITTQTEHKCVLDSCR-------------------------------- 88

Query: 201 TGLVSVMAVNNEIGVIQPMEEIGKICKEFNVPFHTDAAQALGKIPIDVEKWNVSLMSLSG 260
             LVSVM VNNEIGVIQP+EEIG I                                   
Sbjct: 89  --LVSVMTVNNEIGVIQPIEEIGNI----------------------------------- 111

Query: 261 HKIYGPKGIGALYMRRRPRIRVEPQMNGGGQERGIR 296
                    GALYMRRRPRIRVEPQMNGGGQERGIR
Sbjct: 112 --------FGALYMRRRPRIRVEPQMNGGGQERGIR 139


>GSVIVT01037384001 assembled CDS
          Length = 463

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 2/232 (0%)

Query: 60  ARPLYLDMQATSPVDPRVLDAMLPYYLARFGNPHSRTHLYGWESDSAVETARSQVAELIG 119
           ++ +YLD  ATS     VL A+  YY A   N H   H    ++    E+AR +VA  I 
Sbjct: 71  SKLVYLDNAATSQKPTAVLKALQNYYEAYNSNVHRGIHFLSAKATDEYESARRKVAAFIN 130

Query: 120 AS-PKEIVFTSGATES-NNISIKGVMKFYKEKKRHVVTTQTEHKCVLDSCRHLQQEGFEV 177
           AS P EI+FT  ATE+ N ++    +   K +   V+T    H  ++      Q+ G  +
Sbjct: 131 ASEPGEIIFTRNATEAINLVAYSWGLSNLKPEDEIVLTVAEHHSAIVPWQLVAQKTGAIL 190

Query: 178 TYLPVRNDGIVDLEKLRSAIRPDTGLVSVMAVNNEIGVIQPMEEIGKICKEFNVPFHTDA 237
            ++ +  D + D+EKL+  I   T L+ V  ++N +    P+ +I             DA
Sbjct: 191 KFVNLTEDEVPDVEKLKEMISRKTKLLVVHHISNVLASALPIYDIVHWAHAVGAKVLVDA 250

Query: 238 AQALGKIPIDVEKWNVSLMSLSGHKIYGPKGIGALYMRRRPRIRVEPQMNGG 289
            Q++  + +DV++ +   +  S HK+ GP GIG LY +      + P + GG
Sbjct: 251 CQSVPHMAVDVQRLDADFLVASSHKMCGPTGIGFLYGKSDLLFAMPPFLGGG 302