Jatropha Genome Database

JcCB0652571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0652571.10 + phase: 1 /pseudo/partial
         (129 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015684001 assembled CDS                                       221   5e-59
GSVIVT01031418001 assembled CDS                                       218   7e-58
GSVIVT01036152001 assembled CDS                                       184   1e-47

>GSVIVT01015684001 assembled CDS
          Length = 388

 Score =  221 bits (564), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 103/113 (91%), Positives = 108/113 (95%)

Query: 1   LDVYNDKI*HLLEPETLTWADRIQFHRLNIKHDSRLEGLIKMSDLTINLAAICTPADYNT 60
           +DVYNDKI HLLEP    W+DRIQFHR+NIKHDSRLEGLIKM+DLT+NLAAICTPADYNT
Sbjct: 47  VDVYNDKIRHLLEPAAHPWSDRIQFHRINIKHDSRLEGLIKMADLTVNLAAICTPADYNT 106

Query: 61  RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQD 113
           RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQD
Sbjct: 107 RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQD 159


>GSVIVT01031418001 assembled CDS
          Length = 388

 Score =  218 bits (554), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 103/113 (91%), Positives = 108/113 (95%)

Query: 1   LDVYNDKI*HLLEPETLTWADRIQFHRLNIKHDSRLEGLIKMSDLTINLAAICTPADYNT 60
           +DVY+DKI HLLEP T  W+DRIQFHR+NIKHDSRLEGLIKM+DLTINLAAICTPADYNT
Sbjct: 47  VDVYSDKIKHLLEPSTHPWSDRIQFHRINIKHDSRLEGLIKMADLTINLAAICTPADYNT 106

Query: 61  RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQD 113
           RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPL QD
Sbjct: 107 RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLWQD 159


>GSVIVT01036152001 assembled CDS
          Length = 382

 Score =  184 bits (467), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/113 (77%), Positives = 103/113 (91%), Gaps = 1/113 (0%)

Query: 1   LDVYNDKI*HLLEPETLTWADRIQFHRLNIKHDSRLEGLIKMSDLTINLAAICTPADYNT 60
           +DV +DKI  LLE ++ +W++RI+FH++NIK+DSRLE LIK SDLTINLAAICTPADYNT
Sbjct: 44  IDVSSDKITRLLE-KSCSWSNRIEFHKINIKNDSRLETLIKSSDLTINLAAICTPADYNT 102

Query: 61  RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQD 113
           RPLDTIYSNF+DA+PVVKYC+E+NKRLIHFSTCEVYGKTIGSFLP D  LRQD
Sbjct: 103 RPLDTIYSNFLDAIPVVKYCTESNKRLIHFSTCEVYGKTIGSFLPADHSLRQD 155