Jatropha Genome Database

JcCB0647611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0647611.10 + phase: 0 /partial
         (108 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015512001 assembled CDS                                       203   1e-53
GSVIVT01025417001 assembled CDS                                       163   1e-41
GSVIVT01021505001 assembled CDS                                        63   3e-11
GSVIVT01022227001 assembled CDS                                        52   4e-08
GSVIVT01026912001 assembled CDS                                        52   6e-08
GSVIVT01010443001 assembled CDS                                        47   3e-06

>GSVIVT01015512001 assembled CDS
          Length = 398

 Score =  203 bits (517), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 98/108 (90%), Positives = 103/108 (95%)

Query: 1   VDTTACLCRVDAGLKTVASAKKYVPGSKLCLQPDIKPSIHPTRSKPSRGDRSRNQSPLLP 60
           VDTTACLCRVDAGLKTVA AKK+VPG+KLCLQPDIKPSIHPTR KPSRGDRSR+QSPLLP
Sbjct: 10  VDTTACLCRVDAGLKTVAGAKKFVPGTKLCLQPDIKPSIHPTRHKPSRGDRSRSQSPLLP 69

Query: 61  GLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLGIA 108
           GLPDDLAIACLIRVPRIEH KLRLVCKRWYRLL GNF+YS R+NLGIA
Sbjct: 70  GLPDDLAIACLIRVPRIEHRKLRLVCKRWYRLLVGNFYYSLRKNLGIA 117


>GSVIVT01025417001 assembled CDS
          Length = 412

 Score =  163 bits (413), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/108 (72%), Positives = 94/108 (87%), Gaps = 2/108 (1%)

Query: 1   VDTTACLCRVDAGLKTVASAKKYVPGSKLCLQPDIKPSIHPTRSKPSRGDRSRNQSPLLP 60
           VD+ +C C+VD+GLKTVA A+K+VPGSKLC+QPDI P  H  +SK SR +R+R Q PLLP
Sbjct: 22  VDSVSCYCKVDSGLKTVAGARKFVPGSKLCIQPDINPHAH--KSKNSRRERTRFQPPLLP 79

Query: 61  GLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLGIA 108
           GLPDDLAIACLIRVPR+EH KLRLVCKRW+RLL+GNFFYS R++LG+A
Sbjct: 80  GLPDDLAIACLIRVPRVEHRKLRLVCKRWHRLLSGNFFYSLRKSLGMA 127


>GSVIVT01021505001 assembled CDS
          Length = 429

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 3/52 (5%)

Query: 57  PLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGN--FFYSHRRNLG 106
           PL+PGLPDD+A+ CL+R+P   H   R VCKRW+ LL GN   F++ R+ LG
Sbjct: 61  PLIPGLPDDIALNCLLRLPVQSHAACRAVCKRWH-LLLGNKERFFTRRKELG 111


>GSVIVT01022227001 assembled CDS
          Length = 344

 Score = 52.4 bits (124), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 58  LLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHR 102
           L+P LPDD+A+ C+ RVPR  H  L LVCK W  +L    F+S R
Sbjct: 22  LIPNLPDDVALQCIARVPRSRHPHLLLVCKSWRSILNSPDFFSTR 66


>GSVIVT01026912001 assembled CDS
          Length = 359

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 55  QSPLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRR 103
           QSPL+ GLPDD+A+ CL RVPR  H  L+ V +RW  L++   ++++R+
Sbjct: 18  QSPLICGLPDDIALICLARVPRKYHTLLKCVSRRWRDLVSSEEWHAYRQ 66


>GSVIVT01010443001 assembled CDS
          Length = 385

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 17  VASAKKYVPGSKLCLQPDIKP-SIHPTRSKPSRGDRSRNQS--PLLPGLPDDLAIACLIR 73
           + + KK    S +CL   ++  ++  ++S P    +  + S  P+LPGLPDD+A  CL  
Sbjct: 4   IVAGKKRFTQSNMCLSNSVQQDTLTLSKSNPCLTSQFADDSYGPILPGLPDDVAKYCLAL 63

Query: 74  VPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLGI 107
           VPR     +  V K+W   +    F + R+  G+
Sbjct: 64  VPRSNFPAMGGVSKKWRSFIRSKEFITVRKLAGM 97