Jatropha Genome Database

JcCB0646891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0646891.10 - phase: 0 /partial
         (72 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011384001 assembled CDS                                       146   2e-36
GSVIVT01008028001 assembled CDS                                       146   2e-36
GSVIVT01020020001 assembled CDS                                       145   4e-36

>GSVIVT01011384001 assembled CDS
          Length = 197

 Score =  146 bits (368), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 60
           EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH
Sbjct: 66  EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 125

Query: 61  HARVLIRQRHIR 72
           HARVLIRQRHIR
Sbjct: 126 HARVLIRQRHIR 137


>GSVIVT01008028001 assembled CDS
          Length = 197

 Score =  146 bits (368), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 60
           EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH
Sbjct: 66  EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 125

Query: 61  HARVLIRQRHIR 72
           HARVLIRQRHIR
Sbjct: 126 HARVLIRQRHIR 137


>GSVIVT01020020001 assembled CDS
          Length = 197

 Score =  145 bits (365), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/72 (98%), Positives = 72/72 (100%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 60
           EKNPRRIFEGEALLRRMN+YGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH
Sbjct: 66  EKNPRRIFEGEALLRRMNKYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 125

Query: 61  HARVLIRQRHIR 72
           HARVLIRQRHIR
Sbjct: 126 HARVLIRQRHIR 137