Jatropha Genome Database

JcCB0645811.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0645811.10 - phase: 0 /pseudo
         (103 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018949001 assembled CDS                                       137   9e-34
GSVIVT01009719001 assembled CDS                                       134   8e-33

>GSVIVT01018949001 assembled CDS
          Length = 486

 Score =  137 bits (346), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 78/92 (84%), Gaps = 2/92 (2%)

Query: 1  MTSREEGDD-GLRKPFLHTGSWYKMGSRQSSIMGSSTQI-RDGAVSVVLCVLIVALGPIQ 58
          M+ REE D   LRKPFLHTGSWY+MGSRQSSIMGSS QI RD +VSV+LCVLIVALGPIQ
Sbjct: 1  MSFREEEDGRDLRKPFLHTGSWYRMGSRQSSIMGSSAQIIRDNSVSVLLCVLIVALGPIQ 60

Query: 59 FGFTCGYSSPTQAEIIKDLKLSISEVRLIGFL 90
          FGFTCGYSSPTQ+EII DL LS+SE  + G L
Sbjct: 61 FGFTCGYSSPTQSEIISDLGLSLSEFSIFGSL 92


>GSVIVT01009719001 assembled CDS
          Length = 486

 Score =  134 bits (337), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 76/92 (82%), Gaps = 2/92 (2%)

Query: 1  MTSREEGDDG--LRKPFLHTGSWYKMGSRQSSIMGSSTQIRDGAVSVVLCVLIVALGPIQ 58
          M+ R+E +DG  LRKPFLHTGSWY+MGSRQSS+MGSS  IRD +VSVV CVLIVALGPIQ
Sbjct: 1  MSFRDENEDGRDLRKPFLHTGSWYRMGSRQSSMMGSSQVIRDSSVSVVACVLIVALGPIQ 60

Query: 59 FGFTCGYSSPTQAEIIKDLKLSISEVRLIGFL 90
          FGFT GYSSPTQ+ I KDL L++SE  L G L
Sbjct: 61 FGFTSGYSSPTQSAITKDLGLTVSEYSLFGSL 92