Jatropha Genome Database

JcCB0645591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0645591.10 - phase: 0 /pseudo
         (95 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009879001 assembled CDS                                       104   7e-24
GSVIVT01021865001 assembled CDS                                        85   6e-18
GSVIVT01036052001 assembled CDS                                        80   3e-16
GSVIVT01024465001 assembled CDS                                        66   3e-12

>GSVIVT01009879001 assembled CDS
          Length = 870

 Score =  104 bits (260), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 52/68 (76%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXNIPVDTSRPNPNSIEYDNLYLDMNGIIH 60
          MGVPAFYRWLAEKYPL                +IPVDTS+PNPN+IEYDNLYLDMNGIIH
Sbjct: 1  MGVPAFYRWLAEKYPLVVVDVIEEEPVEIDGISIPVDTSKPNPNNIEYDNLYLDMNGIIH 60

Query: 61 PCFHPEDR 68
          PCFHPEDR
Sbjct: 61 PCFHPEDR 68


>GSVIVT01021865001 assembled CDS
          Length = 1083

 Score = 85.1 bits (209), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 46/68 (67%), Gaps = 3/68 (4%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXNIPVDTSRPNPNSIEYDNLYLDMNGIIH 60
          MGVPAFYRWLA++YPL                   +D SRPNPN +E+DNLYLDMNGIIH
Sbjct: 1  MGVPAFYRWLADRYPLAVMDVVEEEPSEG---GAEIDVSRPNPNGMEFDNLYLDMNGIIH 57

Query: 61 PCFHPEDR 68
          PCFHP+ +
Sbjct: 58 PCFHPDGK 65


>GSVIVT01036052001 assembled CDS
          Length = 525

 Score = 79.7 bits (195), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 42/68 (61%), Gaps = 10/68 (14%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXNIPVDTSRPNPNSIEYDNLYLDMNGIIH 60
          MGVP+FYRWL  KYP                     ++S  NPN IE+DNLYLDMNGIIH
Sbjct: 1  MGVPSFYRWLVNKYPEIVVRAVEDER----------ESSSANPNGIEFDNLYLDMNGIIH 50

Query: 61 PCFHPEDR 68
          PCFHPED+
Sbjct: 51 PCFHPEDQ 58


>GSVIVT01024465001 assembled CDS
          Length = 845

 Score = 65.9 bits (159), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 38/66 (57%), Gaps = 19/66 (28%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXNIPVDTSRPNPNSIEYDNLYLDMNGIIH 60
          MG+PAFYRWLA++YPL                   V+     P    +DNLYLDMNGIIH
Sbjct: 1  MGIPAFYRWLADRYPLAV-----------------VNAVEDRPAV--FDNLYLDMNGIIH 41

Query: 61 PCFHPE 66
          PCFHPE
Sbjct: 42 PCFHPE 47