Jatropha Genome Database

JcCB0644471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0644471.10 + phase: 0 /TE/partial
         (639 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029816001 assembled CDS                                        56   5e-08

>GSVIVT01029816001 assembled CDS
          Length = 1050

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 60/108 (55%), Gaps = 6/108 (5%)

Query: 80  ANDSLELED-----WWTLNSMLVSWVFHTIEPTLRSTISHMENVSDLWEDIKQRFS-VGN 133
           AN + + ED     W + NSM+++W+ +++E  +  T   +    DLW+++++ +S +GN
Sbjct: 617 ANKAPKPEDHVYQTWDSENSMVMAWLINSMETAIGQTYLFLPTAKDLWDEVQETYSDLGN 676

Query: 134 GPRVQQVRSDLANCKQDGQAIVTYYSRLKTIWDELNNYDKYQYVITSD 181
             ++ ++++ L + KQ   ++  YY+ L   W EL+ +   ++    D
Sbjct: 677 ATQMFEIKTKLKDIKQGSHSVTQYYNILPNAWQELDLFSNMEWKCAED 724