Jatropha Genome Database

JcCB0644101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0644101.10 + phase: 1 /partial
         (213 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013726001 assembled CDS                                       200   4e-52
GSVIVT01013732001 assembled CDS                                       200   5e-52
GSVIVT01013729001 assembled CDS                                       197   4e-51
GSVIVT01032163001 assembled CDS                                        98   3e-21

>GSVIVT01013726001 assembled CDS
          Length = 495

 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 103/217 (47%), Positives = 144/217 (66%), Gaps = 6/217 (2%)

Query: 1   ITAAKSIHEAGIQDILILEASHRIGGRLMKTQFSGLTVEKGANWLFG-GGPVFNPXXXXX 59
           I+AAK++ +AGI++ILILEA+ RIGGR+ KT F+GL+VE GANW+ G GG   NP     
Sbjct: 46  ISAAKTLSDAGIKNILILEATDRIGGRIHKTNFAGLSVEMGANWVEGVGGSEMNPIWEMV 105

Query: 60  XXXXXXXXXNDYQNITSNTYKQNGGLYPKQVVEKIDKVATAMDDFCAAFSKKLSVQKKDI 119
                    +DY N++SNTYKQ GGLY + V + +      + +F    S  L+ +K++ 
Sbjct: 106 NKIKLKTFFSDYDNVSSNTYKQVGGLYAESVAQHLLDSLDNVVEFSENLSTLLTAKKQE- 164

Query: 120 DVSILAAQRIFKKAPTSPLEMVIDYYHNDFEDAEPPKVTSLKHTYPRNELVDHGEDEYFV 179
           D+S+L AQR+  + P++PLEM IDYY+ D+E AEPP+VTSL++T P     + GED YFV
Sbjct: 165 DISVLTAQRLKNRVPSTPLEMAIDYYNYDYEFAEPPRVTSLQNTAPLPTFANFGEDLYFV 224

Query: 180 ADPRGFEIIVQYLAKQFLSS----LTKDPRLKLNKVI 212
            D RG+E +V Y+AKQFL++       DPRL LNK +
Sbjct: 225 GDSRGYESVVHYVAKQFLTTNKDGQITDPRLLLNKAV 261


>GSVIVT01013732001 assembled CDS
          Length = 489

 Score =  200 bits (508), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 103/217 (47%), Positives = 145/217 (66%), Gaps = 6/217 (2%)

Query: 1   ITAAKSIHEAGIQDILILEASHRIGGRLMKTQFSGLTVEKGANWLFG-GGPVFNPXXXXX 59
           I+AAK++ +AGI+ ILILEA++RIGGR+ K  FSG++VE GANW+ G GGP  NP     
Sbjct: 45  ISAAKTLSDAGIKRILILEATNRIGGRMYKANFSGVSVELGANWVSGVGGPQVNPVWIMA 104

Query: 60  XXXXXXXXXNDYQNITSNTYKQNGGLYPKQVVEKIDKVATAMDDFCAAFSKKLSVQKKDI 119
                    +++ N++SNTYK  GG+Y + V  K  +VA  + +F    SK L+ +K+  
Sbjct: 105 NKLRLKSFLSNFLNLSSNTYKPEGGVYEESVARKAFEVAEQVVEFGTKVSKDLAARKQP- 163

Query: 120 DVSILAAQRIFKKAPTSPLEMVIDYYHNDFEDAEPPKVTSLKHTYPRNELVDHGEDEYFV 179
           D+SIL +QR+    P +PLEMVIDYY  DFE AEPP+ TSL ++ P +   + GED YFV
Sbjct: 164 DISILTSQRLKNYFPKTPLEMVIDYYLCDFESAEPPRATSLLNSEPSSTYSNFGEDSYFV 223

Query: 180 ADPRGFEIIVQYLAKQFLSS----LTKDPRLKLNKVI 212
           +DPRG+E +V Y+A+QFL++       DPRL+L KV+
Sbjct: 224 SDPRGYESVVHYVAQQFLTTNAAGQITDPRLQLKKVV 260


>GSVIVT01013729001 assembled CDS
          Length = 505

 Score =  197 bits (500), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 102/217 (47%), Positives = 140/217 (64%), Gaps = 6/217 (2%)

Query: 1   ITAAKSIHEAGIQDILILEASHRIGGRLMKTQFSGLTVEKGANWLFG-GGPVFNPXXXXX 59
           I+AA  + EAGI++ILILEA++RIGGR+ K  F+GL+VE GA+W+ G GGP  NP     
Sbjct: 56  ISAANKLSEAGIENILILEATNRIGGRIQKMNFAGLSVEIGASWVEGVGGPRLNPIWDMV 115

Query: 60  XXXXXXXXXNDYQNITSNTYKQNGGLYPKQVVEKIDKVATAMDDFCAAFSKKLSVQKKDI 119
                    ++Y NI+SN YKQ GGLY K   +     A  + +F    SK L   ++D 
Sbjct: 116 NRLKLTTFYSNYDNISSNAYKQKGGLYEKSEAQNAFYAAQELSEFIKNVSKYLKAHRQD- 174

Query: 120 DVSILAAQRIFKKAPTSPLEMVIDYYHNDFEDAEPPKVTSLKHTYPRNELVDHGEDEYFV 179
           D+SILA+QR+  + P++PL+M IDY   D+E +EPP+VTSLK++ P +     GED YFV
Sbjct: 175 DISILASQRLKNQVPSTPLDMAIDYIAYDYEFSEPPRVTSLKNSIPLHTFSKFGEDAYFV 234

Query: 180 ADPRGFEIIVQYLAKQFL----SSLTKDPRLKLNKVI 212
           ADP+G+E +V ++AKQFL    S    DPRL  NKV+
Sbjct: 235 ADPKGYESVVYFVAKQFLTTNESGEITDPRLLFNKVV 271


>GSVIVT01032163001 assembled CDS
          Length = 503

 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 111/221 (50%), Gaps = 21/221 (9%)

Query: 1   ITAAKSIHEAGIQDILILEASHRIGGRLMKTQFSGLTVE-KGANWLFGGGPVFNPXXXXX 59
           I+AAK + E G++D++ILEAS RIGGR+ K  F G++VE         GG   NP     
Sbjct: 19  ISAAKVLAEKGVEDLVILEASDRIGGRVRKEDFGGVSVELGAGWVAGVGGKESNPVWELA 78

Query: 60  XXXXXXXXXNDYQNITSNTYKQNGGLYPKQVV----EKIDKVATAMDDFCAAFSKKLSVQ 115
                    +DY N   N Y ++G L+P  V     +K  + A  M     A +      
Sbjct: 79  RKSGLRTCFSDYSNARYNIYDRSGKLFPSGVAADSYKKAVESAIQMIRHQEA-NHHGGGG 137

Query: 116 KKDIDVSILAAQRIFKKAPTSPLEMVIDYYHNDFEDAEPPKVTSLKHTYPRNELVDHGED 175
               D+S L+ Q      P +P+E+ ID+  +DFE AE           P +  ++ GE 
Sbjct: 138 IGGADLSKLSEQL---PDPKTPIELAIDFILHDFEMAE---------VEPISTFLEFGER 185

Query: 176 EYFVADPRGFEIIVQYLAKQFL-SSLTK--DPRLKLNKVIR 213
           EY VAD RG+E I+  +A+ FL SS  K  D RLKLNKV+R
Sbjct: 186 EYLVADERGYEYILYKMAETFLFSSEGKILDSRLKLNKVVR 226