Jatropha Genome Database

JcCB0643441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0643441.10 - phase: 0 /partial
         (113 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031904001 assembled CDS                                       140   1e-34
GSVIVT01009627001 assembled CDS                                       106   2e-24

>GSVIVT01031904001 assembled CDS
          Length = 589

 Score =  140 bits (354), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/118 (65%), Positives = 89/118 (75%), Gaps = 5/118 (4%)

Query: 1   PFEQYADDKVWKIRMQVINLTAVTDTLCKKMYECIESDLLGSLQLGTHNIAPYKSKGIEK 60
           PF+QY +DKV  IRMQVINL+ +TDTLCKKMYECIE+DLLGSLQ G HNIAPYKSKGIE+
Sbjct: 458 PFDQYEEDKVRDIRMQVINLSVITDTLCKKMYECIENDLLGSLQHGIHNIAPYKSKGIER 517

Query: 61  ASELSSCWSNKVNATHKFLTSDGNASGGISELDRP-----SDDSGCSSRKRARKEGGG 113
           ASEL +C SNK +      +S+    GG +E DRP     S +SG SSRKRARKEG G
Sbjct: 518 ASELITCQSNKASNADNCPSSENGTDGGTAEFDRPSGSGSSYESGYSSRKRARKEGLG 575


>GSVIVT01009627001 assembled CDS
          Length = 555

 Score =  106 bits (265), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 56/68 (82%)

Query: 1   PFEQYADDKVWKIRMQVINLTAVTDTLCKKMYECIESDLLGSLQLGTHNIAPYKSKGIEK 60
           PF QY +DKV + RM+++N++A+TD LCKKMYECIE+DLLG LQ   H IAPYKSKG+EK
Sbjct: 461 PFHQYTEDKVAETRMKIMNMSAITDNLCKKMYECIENDLLGPLQQAIHIIAPYKSKGVEK 520

Query: 61  ASELSSCW 68
           ASEL  CW
Sbjct: 521 ASELPLCW 528