Jatropha Genome Database

JcCB0638431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0638431.10 + phase: 2 /partial
         (161 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017804001 assembled CDS                                       214   1e-56

>GSVIVT01017804001 assembled CDS
          Length = 410

 Score =  214 bits (546), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/147 (72%), Positives = 117/147 (79%), Gaps = 12/147 (8%)

Query: 2   AALSWNGEGSFLFTSSSAPYDCNDNGECDEDSPAVPIGRSPRTDVLLNAEKVVLESNGCA 61
           AA +W+GEGSFLFTSSSAP+DCNDNG CDED P VPIGRSPRTDVLLNAEK VLE  GC 
Sbjct: 226 AASNWSGEGSFLFTSSSAPFDCNDNGSCDEDGPVVPIGRSPRTDVLLNAEKGVLEFGGCV 285

Query: 62  DSL-GFDISSVISKTLINWPYKADRGAHVYWLEKGTVEVRPDHILNLIHYEDAASLSIAI 120
             L G  IS           ++   GAHVYWL+KGTVE RPDHILNLIHYEDAASL++AI
Sbjct: 286 LRLAGLYIS-----------FQILEGAHVYWLKKGTVEARPDHILNLIHYEDAASLAVAI 334

Query: 121 LKKKFRGQIFLGCDNHPLSRQEVMDLV 147
           LKKK  GQIFLGCDNHP+SRQE+MDLV
Sbjct: 335 LKKKRHGQIFLGCDNHPVSRQELMDLV 361