Jatropha Genome Database

JcCB0635861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0635861.10 - phase: 1 /partial
         (323 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003687001 assembled CDS                                       236   8e-63

>GSVIVT01003687001 assembled CDS
          Length = 6988

 Score =  236 bits (603), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 119/186 (63%), Positives = 142/186 (76%), Gaps = 1/186 (0%)

Query: 137 VDEESLVRKQSLHILKRVLQISEEGQRNSFVPEKKSREKHSVPHGMTKREMWANKEAKSL 196
           VD+E LVRKQSLHILK +L ++E  Q    VPEK S +K+S P GMTKR  WA+KEAKSL
Sbjct: 355 VDKEGLVRKQSLHILKTILDVNEGSQCYPGVPEKVSHQKNSSPRGMTKRGRWADKEAKSL 414

Query: 197 GVGEICSSIDSPLDIQQQWEAFILQYEMLEEYGTHLVEAAWDHQITLLLQFSVSRDNFAS 256
           GVG+IC S+D  L  QQ+W AFIL YEMLEEYGTHLVEAAW+HQITLLL FS   +N  +
Sbjct: 415 GVGKICQSVDLFLTSQQRWLAFILLYEMLEEYGTHLVEAAWNHQITLLLHFSFP-NNSIN 473

Query: 257 SICGRVCQSEVEDLGEVFTWLTILWQLGFRHDNPQVRCLIMQSFLGIEWMEYGDAAKSVQ 316
           S+ G + Q+++  L E+F WL+ILW+ G  HDNPQVRCLIMQSFLGIEW ++ D AKSV 
Sbjct: 474 SLNGEIFQNQMSSLEEIFNWLSILWERGLCHDNPQVRCLIMQSFLGIEWKKHRDFAKSVP 533

Query: 317 RSFVLG 322
            SFV G
Sbjct: 534 ESFVFG 539



 Score =  140 bits (352), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 77/150 (51%), Positives = 99/150 (66%), Gaps = 4/150 (2%)

Query: 1   SWGVLEATLVPFFLRSAGLSVGMSQNEESDIFEWDQYSVLQGLDGMIDNLNLDKEFILSL 60
           SWGVLE TLVPF +RS GLS+GM QNEES I++W   SV Q      +  ++ +E +  L
Sbjct: 128 SWGVLEETLVPFLIRSVGLSMGMLQNEESAIYQWTGSSVSQVSIQQRNYSDMIEESMFPL 187

Query: 61  SGSFPLSISCHVLTLILDSALQSFQAASTTESMLENDSCYADQLFSKLLWDLCNMSERLF 120
           S    L ISCH+LT ILD+ALQS   A TT  +L N+ CYA+     LLWDLCN+S +L 
Sbjct: 188 S----LPISCHILTSILDAALQSHPEAPTTNLILANECCYAENFAGHLLWDLCNISVQLL 243

Query: 121 SRSLEHRSCAISFLLPVDEESLVRKQSLHI 150
           S+S EHRSC ISFLLP+  ++ V  ++  I
Sbjct: 244 SQSWEHRSCTISFLLPLIFKAFVSHKTFEI 273