Jatropha Genome Database

JcCB0634021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0634021.10 - phase: 0 /pseudo/partial
         (152 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003838001 assembled CDS                                       137   2e-33
GSVIVT01003478001 assembled CDS                                        75   1e-14
GSVIVT01015228001 assembled CDS                                        57   4e-09
GSVIVT01014639001 assembled CDS                                        47   5e-06

>GSVIVT01003838001 assembled CDS
          Length = 302

 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 78/87 (89%)

Query: 36  LTARGTGKEVGDRHPKVGDGALIGACATILGNIKIGEGAMIAAGSLVLKNVDPHSMMAGT 95
           +T  G+GKE+GDRHPKV  GALIGA ATILGNIKIGEGAMIAAGSLVLK+V PHSM+AG 
Sbjct: 196 VTLGGSGKEIGDRHPKVAQGALIGASATILGNIKIGEGAMIAAGSLVLKDVPPHSMVAGI 255

Query: 96  PAKLIGYVVGKDPSLTMKHDASKEFFK 122
           PA+LIG+V  +DPSLTMKHDA+K++F+
Sbjct: 256 PARLIGHVHEQDPSLTMKHDATKDYFE 282


>GSVIVT01003478001 assembled CDS
          Length = 225

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 46/64 (71%)

Query: 36  LTARGTGKEVGDRHPKVGDGALIGACATILGNIKIGEGAMIAAGSLVLKNVDPHSMMAGT 95
           +T  GTGK  GDRHPKVGDG LIGA   +LG+I++G+ A I AGS+VLK V P +   G 
Sbjct: 154 VTLGGTGKVNGDRHPKVGDGVLIGAGTKVLGSIRVGDRAKIGAGSVVLKEVPPETTSVGN 213

Query: 96  PAKL 99
           PA+L
Sbjct: 214 PARL 217


>GSVIVT01015228001 assembled CDS
          Length = 209

 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 34/45 (75%)

Query: 57  LIGACATILGNIKIGEGAMIAAGSLVLKNVDPHSMMAGTPAKLIG 101
           LIGA ATILGNIKIGEGA I AGS+VL +V   +   G PA+L+G
Sbjct: 135 LIGAGATILGNIKIGEGAKIGAGSVVLIDVPARTTAVGNPARLVG 179


>GSVIVT01014639001 assembled CDS
          Length = 274

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 24/32 (75%)

Query: 36  LTARGTGKEVGDRHPKVGDGALIGACATILGN 67
           +T  GTGK  GDRHPK+GDG LIGA   ILGN
Sbjct: 176 VTLGGTGKVSGDRHPKLGDGVLIGAGTCILGN 207