Jatropha Genome Database

JcCB0631101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0631101.10 + phase: 0 /pseudo
         (129 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007682001 assembled CDS                                        88   8e-19

>GSVIVT01007682001 assembled CDS
          Length = 483

 Score = 88.2 bits (217), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 40/55 (72%), Positives = 45/55 (81%)

Query: 53  DDCSFIWDETSQLYFHSRSGIYHDPNGGWYYSSRDGLYYKFENGSYVLLESDKWR 107
           D+  F WDE SQLYFH  SG YHDPN GWYYSSRDGLYYKFE+G+YVLL+S K +
Sbjct: 10  DESIFKWDEKSQLYFHPSSGFYHDPNAGWYYSSRDGLYYKFEDGNYVLLDSQKVQ 64