Jatropha Genome Database

JcCB0627221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0627221.10 - phase: 2 /partial
         (298 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034521001 assembled CDS                                       299   1e-81
GSVIVT01033746001 assembled CDS                                       186   2e-47
GSVIVT01025297001 assembled CDS                                        59   3e-09

>GSVIVT01034521001 assembled CDS
          Length = 361

 Score =  299 bits (765), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 160/259 (61%), Positives = 179/259 (69%), Gaps = 41/259 (15%)

Query: 41  RKFAVLQKKGKWKSVSKVMAERGHHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVEN 100
           RK+A+LQKKGKWKSVSKVMAERGH+VSPQQCEDKFNDLNKRYK+LND+LGRGTSCQVVEN
Sbjct: 106 RKYAILQKKGKWKSVSKVMAERGHYVSPQQCEDKFNDLNKRYKRLNDVLGRGTSCQVVEN 165

Query: 101 PALLEYID-LSEKEKEDVRKILSSKHLFYEEMCSYHNANRLHLPHDPALQRSLQLALRSK 159
           PALL+ +D L+EK KEDVRKILSSKHLFYEEMCSYHN NRLHLP DPALQRSLQLALRS+
Sbjct: 166 PALLDMMDHLTEKTKEDVRKILSSKHLFYEEMCSYHNGNRLHLPPDPALQRSLQLALRSR 225

Query: 160 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEENHPSRGDSKGFYGALGGSMKRLRPGLG 219
                                           + H +R          G  +KR++ G  
Sbjct: 226 --------------------------------DEHDNR--------VYGMPVKRMKQGQN 245

Query: 220 HEDACFGNSSQDGNKGSYSHVQIPQVDMNQISPESSRAAWLQKQWMESRSLQLEEQKVQI 279
            ED  FGN S   +     H Q   VDMNQ+ P  S    LQKQWM SRSLQLEEQK+QI
Sbjct: 246 QEDFSFGNPSNSQDCNRSPHPQSAHVDMNQVYPVGSAEDLLQKQWMRSRSLQLEEQKLQI 305

Query: 280 QLEMLELEKQRFKWKRFSR 298
           Q +MLELEKQRFKW+RF R
Sbjct: 306 QEQMLELEKQRFKWQRFCR 324


>GSVIVT01033746001 assembled CDS
          Length = 410

 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/139 (62%), Positives = 114/139 (82%), Gaps = 3/139 (2%)

Query: 2   KKGSPWQRVKWTDKMVRLLITAVSYIGEDVTSDCG--GGMRRKFAVLQKKGKWKSVSKVM 59
           +K SPW R+KWTD MVRLLI AV YIG++  S+C      ++   +LQKKGKWKSVS+ M
Sbjct: 88  RKVSPWHRMKWTDNMVRLLIMAVFYIGDEGGSECSDPSAKKKTGGLLQKKGKWKSVSRAM 147

Query: 60  AERGHHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLEYID-LSEKEKEDVR 118
            E+G +VSPQQCEDKFNDLNKRYK++ND+LG+GT+C+VVEN +LL+ +D LS K K++VR
Sbjct: 148 MEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLDTMDQLSPKMKDEVR 207

Query: 119 KILSSKHLFYEEMCSYHNA 137
           K+L+SKHLF+ EMC+YHN+
Sbjct: 208 KLLNSKHLFFREMCAYHNS 226



 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 7/62 (11%)

Query: 243 PQVDMNQISPE-------SSRAAWLQKQWMESRSLQLEEQKVQIQLEMLELEKQRFKWKR 295
           P   M Q+S E        +++   +KQWM SR +QLEEQ+V  Q +  ELEKQR KW +
Sbjct: 265 PSPLMRQLSSEVMSVLQDGTKSTLEKKQWMRSRMMQLEEQRVSYQCKAFELEKQRLKWVK 324

Query: 296 FS 297
           FS
Sbjct: 325 FS 326


>GSVIVT01025297001 assembled CDS
          Length = 205

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%)

Query: 227 NSSQDGNKGSYSHVQIPQVDMNQISPESSRAAWLQKQWMESRSLQLEEQKVQIQLEMLEL 286
           N   D   G    +   +V+M  I  + +++ W QK+W+++R LQL+EQ V I  +  EL
Sbjct: 53  NEEYDNADGHAQSMGGFEVEMAGIFEDPAKSPWEQKEWIKNRMLQLQEQMVTIMAQGFEL 112

Query: 287 EKQRFKWKRFS 297
           EKQRFKW RFS
Sbjct: 113 EKQRFKWLRFS 123