Jatropha Genome Database
- JcCB0619401.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0619401.10 + phase: 0 /TE/partial
(602 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01009548001 assembled CDS 166 4e-41
GSVIVT01000641001 assembled CDS 161 9e-40
GSVIVT01012382001 assembled CDS 123 3e-28
GSVIVT01028343001 assembled CDS 103 2e-22
GSVIVT01031724001 assembled CDS 96 4e-20
GSVIVT01013655001 assembled CDS 86 7e-17
GSVIVT01031819001 assembled CDS 84 2e-16
GSVIVT01026124001 assembled CDS 82 9e-16
GSVIVT01013341001 assembled CDS 77 2e-14
GSVIVT01010555001 assembled CDS 77 3e-14
GSVIVT01019138001 assembled CDS 53 4e-07
GSVIVT01011334001 assembled CDS 53 4e-07
GSVIVT01018138001 assembled CDS 52 6e-07
GSVIVT01028763001 assembled CDS 52 1e-06
GSVIVT01015960001 assembled CDS 50 3e-06
>GSVIVT01009548001 assembled CDS
Length = 849
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 143/246 (58%), Gaps = 6/246 (2%)
Query: 336 SRFNMSNAKPVXTPLASHFKLSLSQCPSSEKEKEELKNIPYASAFGSLMYAMVCTKPDIA 395
+ FNM K + KL CP ++ EK+ +K IPYASA GSLMYA C +P+I
Sbjct: 556 TSFNMHTCKDGDVLVVKGDKLGNEHCPKNDLEKDAMKAIPYASAIGSLMYAQACIRPNIV 615
Query: 396 HAVGVVSRFLSNLGKEHXNAVKWILRYLKGTSKICLYFG--DNRPVLDGYTDADMGGDVD 453
V V+ R+LSNLG+ H A K ++RYL+ T+ L + DN V+ GY+++D G D
Sbjct: 616 FIVNVLGRYLSNLGQYHWVAAKKVMRYLQRTNDFMLVYRRVDNLEVV-GYSNSDFNGCSD 674
Query: 454 SRKLTSGYLMTFARAAISWQSKLQKCVALSSIEAEYIAITKASKELLWMKKFLQELGVEQ 513
K TSGY+ AISW+S Q +A S++ A+++A AS +++W++K + EL V
Sbjct: 675 DCKSTSGYIFMLTGGAISWKSVKQSLIAFSTMYAKFVACYGASSQVVWLRKLISELQVVD 734
Query: 514 EKY---ILLCDSQSAVHLSKNSTFHLRSKHIDVRYHWIRDALEMKLFQIEMVHTDDNGAD 570
+ ++ CD+ + V SKN+ SKH++++Y ++D ++ + I+ + T+ AD
Sbjct: 735 SIFRPIVIYCDNNATVFYSKNNKISTSSKHMEIKYLIVKDLVKKEDIVIKHIRTESMLAD 794
Query: 571 MMTKAL 576
+TK L
Sbjct: 795 PLTKGL 800
>GSVIVT01000641001 assembled CDS
Length = 947
Score = 161 bits (407), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 85/222 (38%), Positives = 132/222 (59%), Gaps = 3/222 (1%)
Query: 369 EELKNIPYASAFGSLMYAMVCTKPDIAHAVGVVSRFLSNLGKEHXNAVKWILRYLKGTSK 428
+++ +I Y GSLMY + T+PDI H+V ++SR++ N + H A K I RYL+GT
Sbjct: 229 KKVDSIIYKQIVGSLMY-LTATRPDIMHSVSLISRYMENPTELHFLAAKKICRYLQGTKD 287
Query: 429 ICLYFGDN-RPVLDGYTDADMGGDVDSRKLTSGYLMTFARAAISWQSKLQKCVALSSIEA 487
L++ R L G+TD+D GD D+R+ TSGY+ A+SW SK Q V LS+ EA
Sbjct: 288 FGLFYKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPIVTLSTTEA 347
Query: 488 EYIAITKASKELLWMKKFLQELGVEQ-EKYILLCDSQSAVHLSKNSTFHLRSKHIDVRYH 546
E++A T + + +W++K L+EL ++Q + CD+ S + LSKN H RSKHIDV+Y+
Sbjct: 348 EFVAATVCACQAIWLRKILEELHLKQVGATTIFCDNSSTIKLSKNPVLHGRSKHIDVKYY 407
Query: 547 WIRDALEMKLFQIEMVHTDDNGADMMTKALPTEKLVTCRKIA 588
++RD + + +++ AD+ TK L + RK+
Sbjct: 408 FLRDLSNDGVIDLVYCRSENQVADIFTKPLKLAVFLELRKVT 449
>GSVIVT01012382001 assembled CDS
Length = 952
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 104/183 (56%), Gaps = 2/183 (1%)
Query: 398 VGVVSRFLSNLGKEHXNAVKWILRYLKGTSKICLYFGDNRPV-LDGYTDADMGGDVDSRK 456
V +VS+++ H VK ILRYLK T + N + G++D+D G+ R+
Sbjct: 751 VSLVSQYMHAPTVVHLCMVKRILRYLKKTIGRGIVMRRNGHTDIIGFSDSDWAGNTIDRR 810
Query: 457 LTSGYLMTFARAAISWQSKLQKCVALSSIEAEYIAITKASKELLWMKKFLQELGVEQEKY 516
T+GY M +SW+SK Q VA SS EAEY A+ AS E++W+K L +LG
Sbjct: 811 STTGYCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKNLLTDLGFSPTSP 870
Query: 517 I-LLCDSQSAVHLSKNSTFHLRSKHIDVRYHWIRDALEMKLFQIEMVHTDDNGADMMTKA 575
+ L CD+Q+A+H++ N FH R+KHI+V H+IR ++ K+ Q + + D AD TK
Sbjct: 871 MKLFCDNQAAMHIAANPVFHERTKHIEVDCHFIRQQVQSKVIQTHYIRSSDQLADAFTKV 930
Query: 576 LPT 578
L +
Sbjct: 931 LSS 933
>GSVIVT01028343001 assembled CDS
Length = 2295
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 84/136 (61%), Gaps = 2/136 (1%)
Query: 455 RKLTSGYLMTFARAAISWQSKLQKCVALSSIEAEYIAITKASKELLWMKKFLQELGV-EQ 513
R+ TSGY + ISW+SK Q VA SS EAEY A+ A+ EL+W++ LQEL +
Sbjct: 1467 RRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFGKD 1526
Query: 514 EKYILLCDSQSAVHLSKNSTFHLRSKHIDVRYHWIRDALEMKLFQIEMVHTDDNGADMMT 573
E+ L+CD+Q+A+H++ N FH R+KHI+V H+IR+ + V+++D AD+ T
Sbjct: 1527 EQMKLICDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADIFT 1586
Query: 574 KALPTEKL-VTCRKIA 588
K+L ++ C K+
Sbjct: 1587 KSLRGPRIKYICNKLG 1602
>GSVIVT01031724001 assembled CDS
Length = 1135
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 98/183 (53%), Gaps = 8/183 (4%)
Query: 330 YIEKILSRFNMSNAKPVXTPLASHFKLSLSQCPSSEKEKEELKNIPYASAFGSLMYAMVC 389
YI +L R +S +K V +P+A LS++ + E L Y S G+L Y +
Sbjct: 950 YICDLLQRAGLSESKLVTSPMAVGHVLSIAD--GTRFEDPTL----YRSLVGALQYCTI- 1002
Query: 390 TKPDIAHAVGVVSRFLSNLGKEHXNAVKWILRYLKGTSKICLYFGDNRPV-LDGYTDADM 448
T+PDIA+ + +F+ H AVK +LRYLKG+ L F + + L YTDAD
Sbjct: 1003 TRPDIAYTINKFFQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADG 1062
Query: 449 GGDVDSRKLTSGYLMTFARAAISWQSKLQKCVALSSIEAEYIAITKASKELLWMKKFLQE 508
D R+ T+GY + F ISW + QK V+ SSIE++Y + A+ EL W++ L+E
Sbjct: 1063 ASCPDDRRSTNGYCIFFRGNLISWSASKQKVVSRSSIESKYRGLANATIELTWIQSLLKE 1122
Query: 509 LGV 511
L V
Sbjct: 1123 LFV 1125
>GSVIVT01013655001 assembled CDS
Length = 4396
Score = 85.5 bits (210), Expect = 7e-17, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 401 VSRFLSNLGKEHXNAVKWILRYLKGTSKICLYFGDNRPV-LDGYTDADMGGDVDSRKLTS 459
+S+F+ +H NAVK +LRYL GT + P+ L ++D+D G+ D TS
Sbjct: 4258 LSQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDFTSTS 4317
Query: 460 GYLMTFARAAISWQSKLQKCVALSSIEAEYIAITKASKELLWMKKFLQELGVE-QEKYIL 518
Y++ ISW SK Q+ VA SS EAEY ++ + E+ W+ L ELGV ++ ++
Sbjct: 4318 AYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQQPVI 4377
Query: 519 LCDSQSAVHL 528
CD+ A HL
Sbjct: 4378 YCDNVGATHL 4387
>GSVIVT01031819001 assembled CDS
Length = 149
Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/82 (48%), Positives = 53/82 (64%)
Query: 412 HXNAVKWILRYLKGTSKICLYFGDNRPVLDGYTDADMGGDVDSRKLTSGYLMTFARAAIS 471
H AVKW+LRYL+GT+K C F L GY D D ++D+ K T GY+ T AIS
Sbjct: 68 HYEAVKWMLRYLQGTTKNCPCFRRGELKLQGYVDIDFSNEIDNWKSTIGYVFTLGTTAIS 127
Query: 472 WQSKLQKCVALSSIEAEYIAIT 493
W S+LQK V LS+I+ +Y+A+T
Sbjct: 128 WISQLQKIVVLSTIKVKYVAMT 149
>GSVIVT01026124001 assembled CDS
Length = 1018
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 499 LLWMKKFLQELGVEQEKYILLCDSQSAVHLSKNSTFHLRSKHIDVRYHWIRDALEMKLFQ 558
++W+ L EL +QE IL DS SA+ L+KNS FH +SKHI +YH+IR +E KL
Sbjct: 1 MIWLHGLLDELAKKQEMRILHSDSHSAIFLAKNSVFHSKSKHIQTKYHFIRYLIEDKLVI 60
Query: 559 IEMVHTDDNGADMMTKALPTEKLVTCR-KIADMAN 592
+E ++ N ADM+TK + EKL C IA N
Sbjct: 61 LEKIYGSKNPADMLTKGVTIEKLKLCTASIAATVN 95
>GSVIVT01013341001 assembled CDS
Length = 503
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query: 412 HXNAVKWILRYLKGTSKICLYFGDNRPV-LDGYTDADMGGDVDSRKLTSGYLMTFARAAI 470
H N V IL+YLKGT + L+FG + ++ +TDAD G ++ R+ TSGY I
Sbjct: 8 HMNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCTFVFGNLI 67
Query: 471 SWQSKLQKCVALSSIEAEYIAITKASKELLWMKKFLQELGVEQEKYILLCDS 522
+W+SK Q VA SS E ++ +I E+LW+K+ L+EL + ++ +S
Sbjct: 68 TWRSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEELKITIHPLAMISNS 119
>GSVIVT01010555001 assembled CDS
Length = 147
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 57/96 (59%), Gaps = 8/96 (8%)
Query: 196 LDVKTAFLHGDLEKEIYMEQPEGFK--------LQKSLYGLKQAPRQWYKKFDSFMVNHG 247
+DVK AFL+GDL +E+YM+ P G L+++LYGLKQAPR W+ KF S + G
Sbjct: 1 MDVKNAFLNGDLSEEVYMQPPPGLSVESNKVCHLRRALYGLKQAPRAWFAKFSSTIFRLG 60
Query: 248 YEKTTSNHCVFVKRFEDGDFIILLLYVDDMLIVGHD 283
Y + + +F++R + G ++LL +GH+
Sbjct: 61 YTASPYDSALFLRRTDKGTILLLLYSNTKTSPLGHN 96
>GSVIVT01019138001 assembled CDS
Length = 149
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 503 KKFLQELGVEQEKYILLCDSQSAVHLSKNSTFHLRSKHIDVRYHWIRDAL 552
K F + G ++ Y LLCD++SA+ ++KN FH R++HI V+YH+I++A+
Sbjct: 4 KNFRRHQGEDEATY-LLCDNKSAIAIAKNYVFHSRTRHIAVKYHFIKEAI 52
>GSVIVT01011334001 assembled CDS
Length = 640
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 228 LKQAPRQWYKKFDSFMVNHGYEKTTSNHCVFVKRFEDGDFIILLLYVDDMLIVGHDAKKI 287
LK + F + GY S+H +FVK G I+++YV D+++ ++I
Sbjct: 3 LKNLLELGFDHFTKVVKGFGYSWCHSDHTLFVKHTVKGRTAIIIVYVGDIILTKDHEEEI 62
Query: 288 ESLKKELGKSFAMKDLGSAKQILRMKMSRDRKQRKLWLSQEKYIEKILSRFNM 340
LK F +KDLG+ K M+++ R + +SQ KY+ +L+ M
Sbjct: 63 GKLKSIFAHEFEIKDLGNLKYFFGMEIT--RSNMGIVVSQCKYVLDLLTEIEM 113
>GSVIVT01018138001 assembled CDS
Length = 98
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 238 KFDSFMVNHGYEKTTSNHCVFVKRFEDGDFIILLLYVDDMLIVGHDAKKIESLKKELGKS 297
K +++ G+ T S+ +F+ RF + +YVDD+L+ D I SL +L
Sbjct: 8 KLHRALLSFGFVSTKSDQSLFL-RFTPSHITYVFVYVDDILVTSSDTTAITSLIAQLNSK 66
Query: 298 FAMKDLGSAKQILRMKMSRDRKQRKLWLSQEKYI 331
F++KDLG L +++S L LSQ KYI
Sbjct: 67 FSLKDLGEVHYFLVIQVS--YTNNGLHLSQTKYI 98
>GSVIVT01028763001 assembled CDS
Length = 297
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 459 SGYLMTFARAAISWQSKLQKCVALSSIEAEYIAITKASKELLW 501
+GY+ T ++W SKLQK V LS+ EAEY+ +T A+KE++W
Sbjct: 64 AGYIYTLGGTTVNWISKLQKIVLLSTTEAEYVVVTDANKEMMW 106
>GSVIVT01015960001 assembled CDS
Length = 1205
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 500 LWMKKFLQELGVEQEKYI-LLCDSQSAVHLSKNSTFHLRSKHIDVRYHWIRDALEMKLFQ 558
+W+++ L+EL + + L CD+++ + ++ N H R+KH++V H+I++ ++ L
Sbjct: 1 MWIRRLLEELKMTGSSPMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGLVC 60
Query: 559 IEMVHTDDNGADMMTKALPTEK---LVTCRKIAD 589
+ + T++ AD+ TK L + L C +A+
Sbjct: 61 MTYIPTEEQVADVFTKGLHKRQFDFLCLCVNLAE 94