Jatropha Genome Database

JcCB0616641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0616641.10 - phase: 2 /partial
         (194 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007816001 assembled CDS                                       258   8e-70
GSVIVT01029152001 assembled CDS                                       192   6e-50
GSVIVT01003207001 assembled CDS                                       189   8e-49
GSVIVT01003722001 assembled CDS                                       174   3e-44
GSVIVT01003724001 assembled CDS                                       174   3e-44
GSVIVT01031210001 assembled CDS                                       173   5e-44
GSVIVT01008324001 assembled CDS                                       156   5e-39
GSVIVT01008322001 assembled CDS                                       155   1e-38
GSVIVT01008323001 assembled CDS                                       145   1e-35

>GSVIVT01007816001 assembled CDS
          Length = 392

 Score =  258 bits (660), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 124/163 (76%), Positives = 144/163 (88%)

Query: 1   NSGKEKDSSQSRSLKLQFSNSLSLPVFTGARIEGEECSPVKVVLIDILSGKIVNAGPESF 60
           N  KE    +SRSL+LQFSN+LSLPVFTG RIEGE+CS ++V L+D L+G++V +GPES 
Sbjct: 77  NFEKELHPFESRSLQLQFSNALSLPVFTGTRIEGEDCSSIQVALVDGLTGEVVKSGPESS 136

Query: 61  AKVEIVVLEGDFDSDEGDNWTHDEFKNNIVREREGKKPLLTGDVFVNLNEGIGFMGDISF 120
           A+VEIVVLEGDFD DEGDNWT +EFKNNIVREREGKKPLLTGD F+NL +G+GF+ +ISF
Sbjct: 137 ARVEIVVLEGDFDGDEGDNWTLEEFKNNIVREREGKKPLLTGDAFLNLKDGVGFVSEISF 196

Query: 121 TDNSSWTRSRRFRLGARVVDNFDGTNVREAKTESFIVRDHRGE 163
           TDNSSWTRSR+FRLGARVVDN DGT +REAKTESFIVRDHRGE
Sbjct: 197 TDNSSWTRSRKFRLGARVVDNSDGTRIREAKTESFIVRDHRGE 239


>GSVIVT01029152001 assembled CDS
          Length = 628

 Score =  192 bits (489), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 88/164 (53%), Positives = 129/164 (78%), Gaps = 1/164 (0%)

Query: 1   NSGKEKDSSQSRSLKLQFSNSLSLPVFTGARIEGEECSPVKVVLIDILSGKIVNAGPESF 60
           +S K  +    R+L+LQF + LSLP+FTG ++EGE+ + + +VL+D  SG +V +GPES 
Sbjct: 71  SSPKRIEGPDGRNLQLQFRSRLSLPLFTGGKVEGEQGAAIHIVLVDANSGSVVTSGPESS 130

Query: 61  AKVEIVVLEGDFDSDEGDNWTHDEFKNNIVREREGKKPLLTGDVFVNLNEGIGFMGDISF 120
            K+++VVLEGDF++++ + WT +EF +++V+EREGK+PLLTGD+ V L EG+G +GD++F
Sbjct: 131 VKLDVVVLEGDFNNEDEEGWTQEEFDSHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTF 190

Query: 121 TDNSSWTRSRRFRLGARVVDNF-DGTNVREAKTESFIVRDHRGE 163
           TDNSSW RSR+FRLG +V   F +G ++REAKTE+F V+DHRGE
Sbjct: 191 TDNSSWIRSRKFRLGLKVALGFCEGIHIREAKTEAFTVKDHRGE 234


>GSVIVT01003207001 assembled CDS
          Length = 636

 Score =  189 bits (480), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 84/164 (51%), Positives = 128/164 (78%), Gaps = 1/164 (0%)

Query: 1   NSGKEKDSSQSRSLKLQFSNSLSLPVFTGARIEGEECSPVKVVLIDILSGKIVNAGPESF 60
           +S K  +    R+L+LQF + LSLP+FTG ++EGE+ + + +VL+D  +G +V +GPES 
Sbjct: 84  SSPKRIEGPDGRNLQLQFRSRLSLPLFTGGKVEGEQGTTIHIVLLDASTGHVVTSGPESS 143

Query: 61  AKVEIVVLEGDFDSDEGDNWTHDEFKNNIVREREGKKPLLTGDVFVNLNEGIGFMGDISF 120
            K+++VVLEGDF++++ D W  +EF++++V+EREGK+PLLTGD+ V L EG+G +G+++F
Sbjct: 144 VKLDVVVLEGDFNNEDDDGWNQEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGELTF 203

Query: 121 TDNSSWTRSRRFRLGARVVDNF-DGTNVREAKTESFIVRDHRGE 163
           TDNSSW RSR+FRLG +V   + +G  +REAKT++F V+DHRGE
Sbjct: 204 TDNSSWIRSRKFRLGLKVASGYCEGMRIREAKTDAFTVKDHRGE 247


>GSVIVT01003722001 assembled CDS
          Length = 503

 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 78/153 (50%), Positives = 116/153 (75%), Gaps = 1/153 (0%)

Query: 12  RSLKLQFSNSLSLPVFTGARIEGEECSPVKVVLIDILSGKIVNAGPESFAKVEIVVLEGD 71
           ++L+L F   +   +FTG ++EGE+ + + VVL+D+ +  +V  GPES AK+ +VVLEGD
Sbjct: 26  KNLQLHFKTRMPPHLFTGGKVEGEQGASILVVLLDVDTSSVVQTGPESAAKLNVVVLEGD 85

Query: 72  FDSDEGDNWTHDEFKNNIVREREGKKPLLTGDVFVNLNEGIGFMGDISFTDNSSWTRSRR 131
           F+ +  D+WT + F+++ V+EREGK+PLLTGD+ V L EGIG +GD++FTDNSSW RSR+
Sbjct: 86  FNEESDDDWTKEHFESHEVKEREGKRPLLTGDLQVTLKEGIGTLGDLTFTDNSSWIRSRK 145

Query: 132 FRLGARVVDNF-DGTNVREAKTESFIVRDHRGE 163
           FRLG ++   + +  ++REAKTE+F V+DHRGE
Sbjct: 146 FRLGVKIAPGYCEDVHIREAKTEAFAVKDHRGE 178


>GSVIVT01003724001 assembled CDS
          Length = 381

 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 78/153 (50%), Positives = 116/153 (75%), Gaps = 1/153 (0%)

Query: 12  RSLKLQFSNSLSLPVFTGARIEGEECSPVKVVLIDILSGKIVNAGPESFAKVEIVVLEGD 71
           ++L+L F   +   +FTG ++EGE+ + + VVL+D+ +  +V  GPES AK+ +VVLEGD
Sbjct: 94  KNLQLHFKTRMPPHLFTGGKVEGEQGASILVVLLDVDTSSVVQTGPESAAKLNVVVLEGD 153

Query: 72  FDSDEGDNWTHDEFKNNIVREREGKKPLLTGDVFVNLNEGIGFMGDISFTDNSSWTRSRR 131
           F+ +  D+WT + F+++ V+EREGK+PLLTGD+ V L EGIG +GD++FTDNSSW RSR+
Sbjct: 154 FNEESDDDWTKEHFESHEVKEREGKRPLLTGDLQVTLKEGIGTLGDLTFTDNSSWIRSRK 213

Query: 132 FRLGARVVDNF-DGTNVREAKTESFIVRDHRGE 163
           FRLG ++   + +  ++REAKTE+F V+DHRGE
Sbjct: 214 FRLGVKIAPGYCEDVHIREAKTEAFAVKDHRGE 246


>GSVIVT01031210001 assembled CDS
          Length = 589

 Score =  173 bits (438), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 120/164 (73%), Gaps = 2/164 (1%)

Query: 2   SGKEKDSSQSRSLKLQFSNSLSLPVFTGARIEGEECSPVKVVLIDILSGKIVNAGPESFA 61
           S  + +SS  R+ +L F++ L   +FTG+R+E E  + VK+V++D  S  I+ +GP S  
Sbjct: 84  SSNQIESSGVRNWQLHFASKLPSKIFTGSRVEAEGSTSVKIVILDARSKDIITSGPLSSV 143

Query: 62  KVEIVVLEGDF-DSDEGDNWTHDEFKNNIVREREGKKPLLTGDVFVNLNEGIGFMGDISF 120
           K+EI+VL+GDF  +D+ ++WT  EF  NIVREREGK+PL+TG++FV L  G+G++ D+SF
Sbjct: 144 KIEILVLDGDFGTTDDNEDWTESEFNTNIVREREGKRPLVTGELFVTLRCGVGYIDDVSF 203

Query: 121 TDNSSWTRSRRFRLGARVVDNFDG-TNVREAKTESFIVRDHRGE 163
           TDNSSW RSR+FRLGAR V        +REA++E+F+V+DHRGE
Sbjct: 204 TDNSSWIRSRKFRLGARAVSGISKEVRIREARSEAFVVKDHRGE 247


>GSVIVT01008324001 assembled CDS
          Length = 469

 Score =  156 bits (395), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 77/155 (49%), Positives = 109/155 (70%), Gaps = 1/155 (0%)

Query: 10  QSRSLKLQFSNSLSLPVFTGARIEGEECSPVKVVLIDILSGKIVNAGPESFAKVEIVVLE 69
           ++ +L+L F+  LSLP+FTG +I   E SP+++ +++    ++V        KVEIVVL+
Sbjct: 82  EASNLQLIFTKRLSLPIFTGTKIGYAENSPLQLHIVETSGDQMVPTTLPYSIKVEIVVLD 141

Query: 70  GDFDSDEGDNWTHDEFKNNIVREREGKKPLLTGDVFVNLNEGIGFMGDISFTDNSSWTRS 129
           GDF   + + W+  EF++NIVRER GK+PLL GDV V + +G+  +GDI FTDNSSW RS
Sbjct: 142 GDFPQGDCNTWSSKEFEDNIVRERTGKRPLLAGDVIVTMRDGLAMIGDIEFTDNSSWIRS 201

Query: 130 RRFRLGARVVD-NFDGTNVREAKTESFIVRDHRGE 163
           R+FRLGARVV  +    ++REA TE+F V+DHRGE
Sbjct: 202 RKFRLGARVVPGSRHDVSIREAITEAFAVKDHRGE 236


>GSVIVT01008322001 assembled CDS
          Length = 470

 Score =  155 bits (392), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 113/160 (70%), Gaps = 6/160 (3%)

Query: 8   SSQSRSLKLQFSNSLSLPVFTGARIEGEECSPVKVVLIDILSG---KIVNAGPESFAKVE 64
           + +  +++L F+ +LSLP+FTG +I  +E  P+++++ D  SG    I+ A   SF KVE
Sbjct: 79  APEPSTMRLTFTKNLSLPIFTGTKIVNDENKPLQLIIEDT-SGDNQNILRALSHSF-KVE 136

Query: 65  IVVLEGDFDSDEGDNWTHDEFKNNIVREREGKKPLLTGDVFVNLNEGIGFMGDISFTDNS 124
           I+VL+GDF   + +NW+ +EF N+IV+ER GK+PLL GDV V +  G   +GDI FTDNS
Sbjct: 137 IIVLDGDFPGGDRENWSTEEFDNSIVKERAGKRPLLAGDVLVTMRGGAAVIGDIEFTDNS 196

Query: 125 SWTRSRRFRLGARVV-DNFDGTNVREAKTESFIVRDHRGE 163
           SW RSR FRLGARVV D+     +REA TE+F+V+DHRGE
Sbjct: 197 SWIRSRNFRLGARVVPDSCKEFRIREAITEAFVVKDHRGE 236


>GSVIVT01008323001 assembled CDS
          Length = 469

 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/158 (48%), Positives = 103/158 (65%), Gaps = 3/158 (1%)

Query: 9   SQSRSLKLQFSNSLSLPVFTGARIEGEECSPVKVVLIDILSGKIVNAGPESFAKVEIVVL 68
            +  +L+L FS +LSLP+FTGA+I   E +P+ + ++D    + V        +++IVVL
Sbjct: 83  PEPSNLQLIFSKNLSLPIFTGAKIRDAENNPLLLCIVDKSGDEAVQTTLPYPIQLDIVVL 142

Query: 69  EGDFDSDEGDN--WTHDEFKNNIVREREGKKPLLTGDVFVNLNEGIGFMGDISFTDNSSW 126
           +GDF   E  N  W+ +EF N+IV+ER GK+PLL GDV V + +G   +GDI FTDNS W
Sbjct: 143 DGDFPHGELTNSTWSMEEFNNSIVKERTGKRPLLVGDVLVTMRDGFAVVGDIEFTDNSHW 202

Query: 127 TRSRRFRLGARVVD-NFDGTNVREAKTESFIVRDHRGE 163
            R R+FRLGARVV  +  G  + EA TE F VRDHRGE
Sbjct: 203 IRGRKFRLGARVVPGSCHGVRILEAFTEPFAVRDHRGE 240