Jatropha Genome Database

JcCB0615491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0615491.10 + phase: 0 /pseudo/partial
         (295 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037231001 assembled CDS                                       302   1e-82
GSVIVT01031411001 assembled CDS                                       122   2e-28

>GSVIVT01037231001 assembled CDS
          Length = 1805

 Score =  302 bits (774), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/261 (59%), Positives = 185/261 (70%), Gaps = 2/261 (0%)

Query: 2    YLNFYSFGHIASSVAEELMRKTSDKAIEDPIKSDEEIISAQMKIISKKTAKFRWPNIPRL 61
            Y N+YSF   ASSVAEELM K+SDK+ E    S EEIISAQ+K ISK   KF WPN   L
Sbjct: 858  YTNYYSFAQTASSVAEELMHKSSDKSKEHSTTSAEEIISAQIKAISKNFTKFCWPNAQSL 917

Query: 62   NANVHKEKCGWCYCCRVSSDDLGCLFNVC-LGPVQAGSVDEVVGLQSKRNKKADFTDLIS 120
              +  KE CGWC+ C+ S+ D  CLF    + PVQ GS  E VGLQSK+N+K    D+I+
Sbjct: 918  TMDAEKENCGWCFSCKDSTGDKNCLFKTNFMVPVQEGSKSEGVGLQSKKNRKGHLVDVIN 977

Query: 121  YXXXXXXXXXXXXXXPWLNPHYSKLWCKSVLRASDIVSVKSLLLTLESNLHRLALSAEWL 180
            Y              PW+NPH++KLWCK+ L+ASD+ SVK LLLTLESNL RLALSA+WL
Sbjct: 978  YILSIEVRLRGLLMGPWMNPHHAKLWCKNALKASDVASVKHLLLTLESNLRRLALSADWL 1037

Query: 181  KYVDSAATMGSASHIVIASSRASSKNGIGRKRARYSELDSNPSLNSASGLGMLWWRGGRI 240
            K +DS  TMGSASHIVI SSRASSK G+G+KR R S   S PS N+A+GL + WWRGGR+
Sbjct: 1038 KQMDSFITMGSASHIVI-SSRASSKLGVGKKRTRCSGFVSKPSSNAATGLSLFWWRGGRL 1096

Query: 241  SRRLFSWKILPSSLVSKAARR 261
            SR+LF+WK+LP SL SKAAR+
Sbjct: 1097 SRKLFNWKVLPRSLASKAARQ 1117


>GSVIVT01031411001 assembled CDS
          Length = 1382

 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 132/270 (48%), Gaps = 9/270 (3%)

Query: 1   GYLNFYSFGHIASS-------VAEELMRKTSDKAIEDPIKSDEEIISAQMKIISKKTAKF 53
            Y+N Y+ G  A+S       ++ E  R +  +A  +P K     IS Q+K  S    +F
Sbjct: 414 AYINNYAHGDFAASAAANLAILSSEENRVSEVQASSNPRKVLSANISLQVKAFSSVANRF 473

Query: 54  RWPNIPRLNANVHKEKCGWCYCCRVS-SDDLGCLFNVCLGPVQAGSVDEVVGLQSKRNKK 112
            WPN  +    V +E+CGWC  C+ S S   GCL N        G++  + G++  +N +
Sbjct: 474 FWPNSEKKLVEVPRERCGWCLSCKASVSSKRGCLLNSAALNAIKGAMKILAGIRPLKNVE 533

Query: 113 ADFTDLISYXXXXXXXXXXXXXXPWLNPHYSKLWCKSVLRASDIVSVKSLLLTLESNLHR 172
            +   + +Y              P+L+    K W + V +AS    +K+LLL LE N+  
Sbjct: 534 GNLPSIATYILYMEESLSGLVVGPFLSATCRKQWRRRVEQASTYSVIKALLLELEENIRI 593

Query: 173 LALSAEWLKYVDSAATMGSASHIVIASSRASSKNGIGRKRARYSELDSNPSLNSASGLGM 232
           +ALS +W+K VD+     S +    ++  ++ K G GR+  R S + S  + +       
Sbjct: 594 IALSGDWVKLVDNWLVEASVTQSATSAIGSTQKRGPGRRSKRLSGV-SEVADDRCLDKDF 652

Query: 233 LWWRGGRISRRLFSWKILPSSLVSKAARRG 262
            WWRGG++S+ +F   ILP S V KAAR+G
Sbjct: 653 TWWRGGKLSKHIFQRGILPRSAVKKAARQG 682