Jatropha Genome Database

JcCB0611761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0611761.10 - phase: 0 /partial
         (81 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01001339001 assembled CDS                                       127   1e-30

>GSVIVT01001339001 assembled CDS
          Length = 340

 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/81 (74%), Positives = 69/81 (85%)

Query: 1   MITGSGSQKVIGFDWSKKPGDPEISCDVDNFEDQTLLDSSSFVVVHGAGSFGHFQASKSG 60
           MI+G  S K+ G DWSK+PG+ E S  VD+F DQ+LLDS  F+VVHGAGSFGHFQASKSG
Sbjct: 58  MISGLSSLKICGMDWSKRPGNSEASPTVDDFSDQSLLDSDRFIVVHGAGSFGHFQASKSG 117

Query: 61  VHKGGLDQPLVRAGFVATRIS 81
           VHKGGL+QPLV+AGFVATRIS
Sbjct: 118 VHKGGLNQPLVKAGFVATRIS 138