Jatropha Genome Database

JcCB0611681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0611681.10 - phase: 1 /pseudo/partial
         (125 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016885001 assembled CDS                                       128   7e-31
GSVIVT01015238001 assembled CDS                                       125   5e-30
GSVIVT01035357001 assembled CDS                                       115   4e-27
GSVIVT01007712001 assembled CDS                                        69   4e-13

>GSVIVT01016885001 assembled CDS
          Length = 492

 Score =  128 bits (321), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 68/116 (58%), Positives = 75/116 (64%), Gaps = 21/116 (18%)

Query: 10  FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTIXXXXXXXXXXXXISDMN 69
           F  +  +FDYLKSL+IEEKINKIRWCQTANGALFLLSTNDKTI            ISDMN
Sbjct: 97  FQSHEPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTNDKTIKFWKVQEKKVKKISDMN 156

Query: 70  VDPSKALGNGXXXXXXXXXXXKPYIANGGWPEKSYSCPSNDFTFPPGGIPSLRLPV 125
           +DPSKA+GNG                      +SYS  SNDF+FPPGGIPSLRLP 
Sbjct: 157 LDPSKAVGNG---------------------NRSYSYLSNDFSFPPGGIPSLRLPT 191


>GSVIVT01015238001 assembled CDS
          Length = 508

 Score =  125 bits (314), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 63/115 (54%), Positives = 72/115 (62%), Gaps = 4/115 (3%)

Query: 10  FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTIXXXXXXXXXXXXISDMN 69
           F  +  +FDYLKSL+IEEKINKIRWCQTAN ALFLLSTNDKTI            I DMN
Sbjct: 97  FQSHEPEFDYLKSLEIEEKINKIRWCQTANNALFLLSTNDKTIKFWKIQEKKVKKICDMN 156

Query: 70  VDPSKALGNGXXXXXXXXXXXKPYIANGGWPEKSYSCPSNDFTFPPGGIPSLRLP 124
           +DPSKA GNG           KPY+ NGG  ++SY   S DF+FP G   +L  P
Sbjct: 157 IDPSKATGNG----NPACSIVKPYVTNGGCADRSYGYLSKDFSFPAGSFAALHFP 207


>GSVIVT01035357001 assembled CDS
          Length = 496

 Score =  115 bits (289), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 61/115 (53%), Positives = 70/115 (60%), Gaps = 19/115 (16%)

Query: 10  FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTIXXXXXXXXXXXXISDMN 69
           F  +  +FDYLKSL+IEEKINKIRWCQTAN ALFLLSTNDKTI            + DMN
Sbjct: 100 FQSHEPEFDYLKSLEIEEKINKIRWCQTANSALFLLSTNDKTIKFWKVQEKKVKKVCDMN 159

Query: 70  VDPSKALGNGXXXXXXXXXXXKPYIANGGWPEKSYSCPSNDFTFPPGGIPSLRLP 124
           VDPSKALGNG                      ++++  S DF+FPPGGIP L LP
Sbjct: 160 VDPSKALGNGCV-------------------NRTFNYLSTDFSFPPGGIPFLHLP 195


>GSVIVT01007712001 assembled CDS
          Length = 503

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 10  FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTIXXXXXXXXXXXXISDMN 69
           F  +  +FDYL+SL+IEEKINK+RWC T N +LF+LSTNDKTI            + ++N
Sbjct: 91  FQSHEPEFDYLRSLEIEEKINKVRWCATPNESLFILSTNDKTIKLWKVKDHKPKKVKELN 150

Query: 70  VDPSKALGNGXXXXXX-XXXXXKPYIANG---GWPEK 102
            +P     N             KP +ANG    W EK
Sbjct: 151 PNPFVHSENVLLAESSFVSGQDKPSVANGYALEWTEK 187