Jatropha Genome Database

JcCB0607681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0607681.10 - phase: 0 /pseudo/partial
         (246 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009438001 assembled CDS                                       216   7e-57
GSVIVT01020205001 assembled CDS                                        61   6e-10
GSVIVT01007796001 assembled CDS                                        59   1e-09

>GSVIVT01009438001 assembled CDS
          Length = 380

 Score =  216 bits (551), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 124/232 (53%), Positives = 148/232 (63%), Gaps = 21/232 (9%)

Query: 25  QTIAIIAVREGIIQLGSFDKIAEDLNLVINVQRKFSYLQSIPGVFAMQRPYLPIQHPYIL 84
           QTIAII+VREGIIQLGSFDK+ EDLNLVI++QRKFSYLQSIPG+F++QRPYLPIQ P   
Sbjct: 160 QTIAIISVREGIIQLGSFDKMVEDLNLVISIQRKFSYLQSIPGIFSIQRPYLPIQQP--- 216

Query: 85  KPNTRTIESEEIGFSVDDKRQITGVKRLFDESFDDSPLKSINLGLNSPQNGITGPPIWSI 144
                   + E  FS ++K Q+ G KRL+ +   + P+KSINLG NSPQNG+ GP IWSI
Sbjct: 217 -------NATETSFSPEEKCQLAGAKRLYSDRPGEPPIKSINLGWNSPQNGVAGPAIWSI 269

Query: 145 PPLLPTMSCSLGALLSRLPSVIPSYGTTIQALD---XXXXXXXXXXXXXQRAKAENFGHL 201
           PPLLPTMSCSLGALLS+LPSV+PSY   I+A D                QR K    G L
Sbjct: 270 PPLLPTMSCSLGALLSKLPSVLPSY-NHIEAHDTTLLSNNSNSNINSTSQRLKVNGVGGL 328

Query: 202 -----ASTKVESSCQLDG--EKXXXXXXXXXXXXRAVGFGHIREGENRLNLS 246
                A  K+ESSC +D   E+              +GFG  REG   LNL+
Sbjct: 329 NEIQIAGIKLESSCLMDTNQEEKPSPLDPCLGLRDELGFGRAREGGRALNLN 380


>GSVIVT01020205001 assembled CDS
          Length = 237

 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 38/44 (86%)

Query: 25  QTIAIIAVREGIIQLGSFDKIAEDLNLVINVQRKFSYLQSIPGV 68
           +TIA+IAVREG+IQLG+  K+ EDL+ V+ +++KF Y++SIPGV
Sbjct: 171 KTIALIAVREGVIQLGAVHKVIEDLSYVVLLRKKFGYIESIPGV 214


>GSVIVT01007796001 assembled CDS
          Length = 227

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 39/50 (78%), Gaps = 1/50 (2%)

Query: 25  QTIAIIAVREGIIQLGSFDKIAEDLNLVINVQRKFSYLQSIPGVFAMQRP 74
           +TIA+IAV+EG++QLGS  K+ EDLN V  +Q+KF++L SIPG F +  P
Sbjct: 170 KTIALIAVKEGVLQLGSVKKVTEDLNYVTILQKKFTHLLSIPG-FLLPHP 218