Jatropha Genome Database

JcCB0603751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0603751.10 - phase: 0 /partial
         (141 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007752001 assembled CDS                                       271   8e-74

>GSVIVT01007752001 assembled CDS
          Length = 471

 Score =  271 bits (693), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 127/138 (92%), Positives = 133/138 (96%)

Query: 4   GLEVIEAHYLLGADYDNIEIVIHPQSIIHSMVETEDSSVLAQLGWPDMRLPILYTMSWPD 63
           GLEVIEAHYL GA+YD+IEI+IHPQSIIHSMVET+DSSVLAQLGWPDMRLPILYT+SWPD
Sbjct: 292 GLEVIEAHYLFGAEYDDIEIIIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTLSWPD 351

Query: 64  RISCSEITWPRLDLCKQGSLTFKAPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEM 123
           RI CSEITWPRLDLCK GSLTFK PDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEM
Sbjct: 352 RIYCSEITWPRLDLCKLGSLTFKTPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEM 411

Query: 124 FIDEKISYLDIFKIVELT 141
           FIDEKI YLDIFK+VELT
Sbjct: 412 FIDEKIGYLDIFKVVELT 429